BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928254
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06300.1 | Symbols: AT-P4H-2 | P4H isoform 2 | chr3:1907582-... 1548 0.0
AT5G18900.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 848 0.0
> AT3G06300.1 | Symbols: AT-P4H-2 | P4H isoform 2 | chr3:1907582-1909804
FORWARD LENGTH=1191
Length=1191
Score = 1548 bits (838), Expect = 0.0
Identities = 908/942 (96%), Gaps = 4/942 (0%)
Strand=Plus/Plus
Query 1 AATTACTACGATTTGCTATAATGTCGATGTCTCGGCTCGGATTGTTGTTGTTCGTCGCTA 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 AATTACTACGA-TTGCTATAATGTCGATGTCTCGGCTCGGATTGTTGTTGTTCGTCGCTA 202
Query 61 TATTCCTCGTCCTGCTTCAATCTTCCACTTGTCTGATTAGTTCTCCAAGTTCTATCATCA 120
|||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 203 TATTGCTCGTCTTGCTTCAGTCTTCCACTTGTCTGATTAGTTCTCCAAGTTCTATCATCA 262
Query 121 ACCCTTCTAAAGTCAAACAGGTTTCTTCGAAGCCCAGGGCATTTGTGTATGAAGGTTTTT 180
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 263 ATCCTTCTAAAGTCAAACAGGTTTCGTCGAAGCCCAGGGCATTTGTGTATGAAGGTTTTT 322
Query 181 TGACGGACTTGGAATGTGATCATCTAATCTCCCTTGCGAAAGAGAATCTGCAGAGATCTG 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 323 TGACGGACTTGGAATGTGATCATCTAATCTCTCTTGCGAAAGAGAATCTGCAGAGATCTG 382
Query 241 CGGTTGCTGATAACGATAATGGCGAGAGTCAAGTCAGTGACGTTCGTACCAGCTCCGGCA 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 383 CGGTTGCTGATAACGATAATGGCGAGAGTCAAGTCAGTGATGTTCGTACCAGCTCCGGCA 442
Query 301 CGTTTATCTCCAAAGGAAAGGATCCTATTGTTTCCGGTATAGAGGACAAGCTCTCAACAT 360
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 443 CTTTTATCTCCAAAGGAAAGGATCCTATTGTTTCCGGTATCGAGGACAAGCTCTCAACAT 502
Query 361 GGACATTCCTCCCAAAAGAAAACGGGGAAGACCTTCAGGTATTGAGATATGAGCACGGTC 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GGACATTTCTCCCAAAAGAAAACGGGGAAGACCTTCAGGTATTGAGATATGAGCACGGTC 562
Query 421 AGAAATATGATGCCCACTTTGACTACTTCCACGACAAAGTCAACATCGCCCGTGGTGGAC 480
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 563 AGAAATATGATGCTCACTTTGACTACTTCCACGACAAAGTCAACATTGCCCGTGGTGGAC 622
Query 481 ACCGCATAGCAACGGTTCTCTTGTATCTATCTAATGTCACAAAGGGTGGAGAAACGGTTT 540
|||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 623 ACCGCATAGCAACGGTTCTCTTGTATCTGTCCAATGTCACAAAGGGTGGAGAAACTGTTT 682
Query 541 TTCCCGATGCACAGGAATAT-TCACGCCGCTCGCTTTCTGAGAACAAAGACGATCTTTCT 599
| |||||||||||||||| | || |||||||||||||||||||| |||||||||||||||
Sbjct 683 TCCCCGATGCACAGGAAT-TCTCTCGCCGCTCGCTTTCTGAGAATAAAGACGATCTTTCT 741
Query 600 GATTGTGCAAAGAAAGGAATCGCTGTGAAACCGAAGAAAGGGAATGCTCTGTTGTTCTTC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 GATTGTGCAAAGAAAGGAATCGCTGTGAAACCGAAGAAAGGGAATGCTCTGTTGTTCTTC 801
Query 660 AACCTCCAACAAGACGCAATCCCAGATCCCTTTAGCCTTCACGGAGGTTGTCCAGTGATC 719
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 802 AACCTCCAACAAGACGCAATCCCAGACCCCTTTAGCCTTCACGGAGGTTGTCCAGTGATC 861
Query 720 GAAGGAGAGAAATGGTCGGCTACAAAGTGGATCCACGTGGACTCATTCGATAAGATATTG 779
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 862 GAAGGAGAGAAATGGTCGGCTACTAAGTGGATCCACGTGGACTCATTCGATAAGATATTG 921
Query 780 ACACATGATGGTAACTGTACGGACGTGAACGAGAGCTGTGAGAGATGGGCAGTGCTTGGA 839
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 922 ACACATGATGGTAACTGTACTGACGTAAACGAGAGCTGTGAGAGATGGGCAGTGCTTGGA 981
Query 840 GAATGCGGAAAGAACCCAGAGTATATGGTTGGAACTCCAGAGCTCCCTGGAAATTGCAGA 899
||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 982 GAATGTGGAAAGAATCCAGAGTATATGGTTGGAACTCCAGAGATCCCTGGGAATTGCAGA 1041
Query 900 CATAGCTGTAAAGCTTGTTAAAGAGTT-AAATTTCTCTTTTT 940
| |||||||||||||||||||||| || ||| | ||||||||
Sbjct 1042 CGTAGCTGTAAAGCTTGTTAAAGACTTTAAACTCCTCTTTTT 1083
> AT5G18900.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr5:6304215-6306290
REVERSE LENGTH=1215
Length=1215
Score = 848 bits (459), Expect = 0.0
Identities = 765/910 (84%), Gaps = 31/910 (3%)
Strand=Plus/Plus
Query 24 TCGATGTCTCGGC-TCGGATTGTTG--TT-GTTCGTCGCTATATTCCT-CGTCCTGCTTC 78
|||||| |||| | | ||||| ||| || |||| ||||||| || || |||||||||||
Sbjct 122 TCGATGGCTCGACGT-GGATTATTGATTTCGTTCTTCGCTATCTT-CTCCGTCCTGCTTC 179
Query 79 AATCTTCCACTTGTCTGATTAGTTCTCCAAG-TTCTATCATCAACCCTTCTAAAGTCAAA 137
|||||||||||| |||||| |||||| | || ||| || |||| ||||| ||||||||
Sbjct 180 AATCTTCCACTTCTCTGATCAGTTCTTCTAGCGTCT-TCGTCAATCCTTCCAAAGTCAAG 238
Query 138 CAGGTTTCTTCGAAGCCCAGGGCATTTGTGTATGAAGGTTTTTTGACGGACTTGGAATGT 197
|||||||| ||||| |||||||| |||||||||||||| ||| | ||||| |||||||||
Sbjct 239 CAGGTTTCATCGAAACCCAGGGCGTTTGTGTATGAAGGGTTTCTCACGGAATTGGAATGT 298
Query 198 GATCATCTAATCTCCCTTGCGAAAGAGAATCTGCAGAGATCTGCGGTTGCTGATAACGAT 257
|||||| | |||||||||| |||| || ||| |||||||||| ||||||||||| |||
Sbjct 299 GATCATATGGTCTCCCTTGCAAAAGCGAGCCTGAAGAGATCTGCTGTTGCTGATAATGAT 358
Query 258 AATGGCGAGAGTC-AAGTCAGTGACGTTCGTACCAGCTCCGGCACGTTTATCTCCAAAGG 316
| ||| ||||| | || |||| || ||||| |||||||| ||||| ||||||||||||||
Sbjct 359 AGTGGAGAGAG-CAAATTCAGCGAGGTTCGAACCAGCTCTGGCACCTTTATCTCCAAAGG 417
Query 317 AAAGGATCCTATTGTTTCCGGTATAGAGGACAAGCTCTCAACATGGACATTCCTCCCAAA 376
||||||||| |||||||| |||||||| || ||| |||| || |||||||| || |||||
Sbjct 418 AAAGGATCCCATTGTTTCTGGTATAGAAGATAAGATCTCCACTTGGACATTTCTTCCAAA 477
Query 377 AGAAAACGGGGAAGACCTTCAGGTATTGAGATATGAGCACGGTCAGAAATATGATGCCCA 436
|||||||||||||||| |||||||||||||||| |||||||| || ||||| ||||| ||
Sbjct 478 AGAAAACGGGGAAGACATTCAGGTATTGAGATACGAGCACGGCCAAAAATACGATGCTCA 537
Query 437 CTTTGACTACTTCCACGACAAAGTCAACATCGCCCGTGGTGGACACCGCATAGCAACGGT 496
|||||| ||||| || |||||||||||||| | |||||||||||| ||||| ||||| |
Sbjct 538 CTTTGATTACTTTCATGACAAAGTCAACATTGTCCGTGGTGGACATCGCATGGCAACAAT 597
Query 497 TCTCT-TGTATCTATCTAATGTCAC-AAAGGGTGGAGAAACGGTTTTTCCC-GATGCACA 553
||| | |||||||||| ||||| || ||| ||||||||||| | | ||||| |||||| |
Sbjct 598 TCT-TATGTATCTATCCAATGTGACGAAA-GGTGGAGAAACTG-TATTCCCTGATGCAGA 654
Query 554 GGAATA--TTCACGCCG-CTCGCTTTCTGAGAACAAAGACGATCTTTCTGATTGTGCAAA 610
| ||| ||| ||||| | || ||||| || ||||| || |||||||||||||| ||
Sbjct 655 -G-ATACCTTCTCGCCGAGT-ACTATCTGAAAATAAAGAAGACCTTTCTGATTGTGCCAA 711
Query 611 GAAAGGAATCGCTGTGAAACCGAA-GAAAGGGAATGCTCTGTTGTTCTTCAACCTCCAAC 669
|| |||||| ||||||||||| || ||||||| ||||| ||||||||||||||||||| |
Sbjct 712 GAGAGGAATTGCTGTGAAACC-AAGGAAAGGGGATGCTTTGTTGTTCTTCAACCTCCACC 770
Query 670 AAGACGCAATCCCAGATCCC-TTTAGCCTTCACGGAGGTTGTCCAGTGATCGAAGGAGAG 728
|||||||||||| || ||| || ||||||||||| || ||||| ||||| |||||||||
Sbjct 771 CAGACGCAATCCCGGA-CCCATTGAGCCTTCACGGTGGATGTCCTGTGATAGAAGGAGAG 829
Query 729 AAATGGTCGGCTACAAAGTGGATCCACGTGGACTCATTCGATAAGATATTGACA-CATGA 787
||||||||||| || |||||||||||||| |||||||| |||| ||| ||||| || |
Sbjct 830 AAATGGTCGGCAACCAAGTGGATCCACGTAGACTCATTTGATAGGATCGTGACACCAAG- 888
Query 788 TGGTAACTGTACGGACGTGAACGAGAGCTGTGAGAGATGGGCAGTGCTTGGAGAATGCGG 847
|| ||||| ||||| |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 889 CGGAAACTGCACGGATATGAACGAGAGCTGTGAGAGATGGGCAGTTCTTGGGGAATGCAC 948
Query 848 AAAGAACCCAGAGTATATGGTTGGAACTCCAGAGCTCCCTGGAAATTGCAGAC-ATAGCT 906
|||||| |||||||| |||||||||||| ||||||| ||||| ||||||| | | ||||
Sbjct 949 AAAGAATCCAGAGTACATGGTTGGAACTACAGAGCTTCCTGGCTATTGCAGGCGA-AGCT 1007
Query 907 GTAAAGCTTG 916
|||| |||||
Sbjct 1008 GTAAGGCTTG 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45964244505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5