BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928265
Length=1706
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06370.1 | Symbols: NHX4, ATNHX4 | sodium hydrogen exchanger... 2316 0.0
> AT3G06370.1 | Symbols: NHX4, ATNHX4 | sodium hydrogen exchanger
4 | chr3:1930396-1934073 REVERSE LENGTH=2207
Length=2207
Score = 2316 bits (1254), Expect = 0.0
Identities = 1439/1528 (94%), Gaps = 14/1528 (1%)
Strand=Plus/Plus
Query 1 TCTTAGAGCAGAGATTCGGCGATGGTGATCGGATTAACCACAATGCTGGAGAAATCAGAG 60
||||| ||| |||||| || |||||||||||||||| |||||||||||| ||| |||||
Sbjct 172 TCTTAAAGCTGAGATTTGGAAATGGTGATCGGATTAAGCACAATGCTGGAAAAAACAGAG 231
Query 61 GCTCTTTTCGCTTCAGATCATGCATCGGTCGTCTCCATGAACTTATTCGTTGCTCTGCTT 120
|||||||||||||| |||||||||||||||||||||||||| || ||||| ||| |||||
Sbjct 232 GCTCTTTTCGCTTCTGATCATGCATCGGTCGTCTCCATGAATTTGTTCGTAGCTTTGCTT 291
Query 121 TGTGCTTGCATAGTGCTTGGTCACTTGCTCGAGGAGACTCGGTGGATGAACGAGTCAATC 180
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 292 TGTGCTTGCATCGTGCTTGGTCACTTGCTTGAGGAGACTCGGTGGATGAACGAGTCAATC 351
Query 181 ACTGCTCTTATCATCGGTTCATGTACTGGGATTGTGATCTTGCTTATAAGTGGAGGCAAG 240
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 352 ACTGCTCTTATCATTGGTTCGTGTACTGGGATTGTGATCTTGCTTATAAGTGGAGGCAAA 411
Query 241 AGCTCAAGGATTCTTGTGTTCAGTGAAGATCTCTTCTTCATTTATCTTCTTCCACCGATT 300
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 412 AGCTCAAGGATTCTTGTGTTTAGTGAAGATCTCTTCTTTATTTATCTTCTTCCACCAATT 471
Query 301 ATATTCAACGCAGGATTTCAGGTTAAGAAGAAGCAATTTTTTCGCAACTTCATGACCATT 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 ATATTCAACGCAGGGTTTCAGGTTAAGAAGAAGCAATTTTTTCGCAACTTCATGACCATT 531
Query 361 ATGTTATTTGGTGCTGTTGGTACTCTCATTTCATTTGTTATCATATCATTAGGTGCTAAA 420
||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 532 ATGTTATTTGGTGCTATTGGAACTCTCATTTCATTTGTTATCATCTCATTTGGTGCTAAA 591
Query 421 CATTTTTTCAAGAAAATGAATATCGGTGATCTTACCATTTCGGATTATCTAGCCATTGGA 480
||| ||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 592 CATCTTTTCGAGAAAATGAATATCGGTGATCTTACCATTGCGGACTATCTAGCCATTGGA 651
Query 481 GCAATATTCTCTGCTACAGACTCTGTTTGCACCTTGCAAGTGCTTAATCAAGACGAGACA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GCAATATTCTCTGCTACAGACTCTGTTTGCACCTTGCAAGTGCTTAATCAAGACGAGACA 711
Query 541 CCTCTCTTGTACAGTCTTGTCTTTGGAGAAGGTGTAGTGAACGATGCCACATCGGTTGTT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 712 CCTCTCTTGTACAGTCTTGTCTTTGGAGAAGGTGTAGTGAACGATGCCACATCGGTCGTG 771
Query 601 CTCTTCAACGCGATACAGAGATTTGACCTCACACACATCAATTCAGCCATAGCTTTGGAG 660
|||||||| || ||||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 772 CTCTTCAATGCAATACAGAGATTCGACCTCACAAATATCAATTCAGCCATAGCTTTGGAG 831
Query 661 TTTGCTGGAAACTTCTTTTATCTCTTCATCTTAAGCACAGCACTTGGTGTTGCAGCTGGA 720
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 832 TTTGCTGGAAACTTTTTTTACCTCTTTATCTTAAGCACAGCACTTGGTGTTGCAGCTGGA 891
Query 721 TTGCTCAGTGCTTTTGTTATCAAGAAGCTCTATATCGGAAGGCACTCTACTGATCGTGAA 780
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 892 TTGCTCAGTGCTTTTGTTATCAAGAAGCTCTATATAGGAAGGCACTCTACTGATCGTGAA 951
Query 781 GTTGCACTTATGATGCTATTGGCTTACTTATCATATATGTTGGCAGAGCTGTTCCACTTG 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 952 GTTGCACTTATGATGCTATTGGCTTACTTATCATATATGTTGGCAGAGCTATTCCACTTG 1011
Query 841 AGCTCTATCTTGACTGTGTTCTTCTGTGGTATTGTTATGTCTCACTACACATGGCACAAT 900
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 1012 AGCTCTATCTTGACTGTGTTCTTCTGCGGGATTGTTATGTCTCACTATACATGGCACAAT 1071
Query 901 GTTACAGATAAATCAAAGGTCACTACAAAACATACTTTTGCTGCATTGTCATTTCTAGCT 960
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1072 GTTACAGATAAATCCAAGGTCACTACAAAACATACTTTTGCTGCAATGTCATTTCTAGCT 1131
Query 961 GAGATTTTTATCTTCCTTTACGTTGGAATGGACGCTCTCGATATCGAGAAATGGGACGTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GAGATTTTTATCTTCCTTTACGTTGGAATGGACGCTCTCGATATCGAGAAATGGGACGTT 1191
Query 1021 GTACGCAGCAGTCCTGGTCAGTCGATTGGTGTGAGTTCAATACTTCTCGGGCTTATTCTT 1080
||||||| ||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 1192 GTACGCAACAGTCCTGGTCAGTCGATTGGAGTTAGTTCAATACTTCTTGGGCTTATTCTT 1251
Query 1081 GTGGGTCGCGCCGCCTTCGTGTTCCCACTTTCCTTCCTGTCCAATTTAACAAAGTCTTCA 1140
||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1252 CTGGGTCGCGCCGCGTTCGTGTTTCCACTTTCCTTCTTGTCCAATTTAACAAAGTCTTCA 1311
Query 1141 CTGGATGAGAAAATAGA-TTGGAAA-AAACAAGTAACCATTTGGTGGGCTGGTCTGATGC 1198
| ||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct 1312 CCGGATGAGAAAATAGACTT--AAAGAAACAAGTAACCATTTGGTGGGCTGGTCTGATGC 1369
Query 1199 GTGGTGCAGTGTCAATGGCTCTTGCTTATAACCAGTTCACAACTTCAGGACACACCAAGG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 GTGGTGCAGTGTCAATGGCTCTTGCTTATAACCAGTTCACAACTTCAGGACACACCAAGG 1429
Query 1259 TTCTTGGAAACGCTATCATGATCACCAGCACCATCACTGTTGTTCTTTTCAGCACTGTGG 1318
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1430 TTCTTGGGAACGCTATCATGATCACCAGTACCATCACTGTTGTTCTTTTCAGTACTGTGG 1489
Query 1319 TGTTTGGATTGCTAACCAAACCGTTAGTAAAACACTTGCAGCCTTCATCAAAAC-GATCT 1377
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | ||
Sbjct 1490 TGTTTGGATTGCTAACCAAACCGTTAGTCAAACATTTGCAGCCTTCATCAAAACAG-TCC 1548
Query 1378 TCCACCACCGCGCTGCAAATCACAAC-AGGATCTTCTTTCCACGATCCGCTCCTCACAAA 1436
||||| ||||||||||| |||||| | | |||||||||||||||||||| ||||| ||
Sbjct 1549 TCCACGACCGCGCTGCAGATCACA-CTAAGATCTTCTTTCCACGATCCGATCCTC-CA-- 1604
Query 1437 CAATGAGCCGTTGCTCAGTACCCAAGGCCCGTCAGAATACAACATTGAACAACCGGTTAG 1496
|||||||||||||||||||||||||| |||||||||| || |||||||| |||||
Sbjct 1605 ---TGAGCCGTTGCTCAGTACCCAAGGCCAGTCAGAATACGACCCTGAACAACATGTTAG 1661
Query 1497 CTTTAGAATGTTCTGGAACTCTCCGTCC 1524
||| |||||||||||||| ||||| |||
Sbjct 1662 CTTCAGAATGTTCTGGAAATCTCCTTCC 1689
Score = 143 bits (77), Expect = 6e-33
Identities = 89/95 (94%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 1607 TTCCAGGTTCACCCATTGATACTAGTGTTCGGCAGTGGAGTGAAGAAGTTGAAAACAAGG 1666
||||||||||||||||||| | |||||||| ||| |||||||||||||| ||||||||||
Sbjct 1686 TTCCAGGTTCACCCATTGAGAATAGTGTTCCGCAATGGAGTGAAGAAGTAGAAAACAAGG 1745
Query 1667 AACAAAACGGCGAACCTTGATGACCATTATGACAT 1701
||||||||||||||||||||||||||| |||||||
Sbjct 1746 AACAAAACGGCGAACCTTGATGACCATAATGACAT 1780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84336915600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5