BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928280
Length=289
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06440.1 | Symbols: | Galactosyltransferase family protein ... 329 7e-90
> AT3G06440.1 | Symbols: | Galactosyltransferase family protein
| chr3:1972622-1975754 REVERSE LENGTH=2282
Length=2282
Score = 329 bits (178), Expect = 7e-90
Identities = 233/259 (90%), Gaps = 6/259 (2%)
Strand=Plus/Plus
Query 3 GAAGAAGCTACATTGGCCATGAAAGATTTGGTTTTTCTGATTAATAAAGACAAAG-GAGC 61
||||||||||||||||| ||||||| ||||||||| || |||| ||| ||| ||||
Sbjct 477 GAAGAAGCTACATTGGCAATGAAAGGTTTGGTTTTAGAAATCAATAGAGA-GAAGAGAGC 535
Query 62 TTCTTCTTCTGCTATGGTCTCTAACGAACTTGGAAGGAA-CTGTCCGGATTTTGTCACTG 120
|| |||||||| |||||||||||| ||| || ||| ||| ||||||||||||||||||||
Sbjct 536 TTATTCTTCTGGTATGGTCTCTAAGGAAATTAGAA-GAATCTGTCCGGATTTTGTCACTG 594
Query 121 CATTTGATGGA-GATTTGTCTGGTTTAAGGCATGTACTACTTGAGCTTCCTTGTGGTTTA 179
|||||||| | ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 595 CATTTGAT-AAGGATTTGTCTGGTTTAAGTCATGTACTTCTTGAGCTTCCTTGTGGTTTA 653
Query 180 ATTGAAGATTCTTCAGTAACTTTGGTTGGTATTCCTGATGAACATTCTAGAAGCTTTCAG 239
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 654 ATTGAAGATTCTTCAATAACTTTGGTTGGTATTCCTGATGAACATTCTAGTAGCTTCCAG 713
Query 240 ATTCAGCTCGTTGGCTCGG 258
|||||||||||||||||||
Sbjct 714 ATTCAGCTCGTTGGCTCGG 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13320953485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5