BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928283
Length=650
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06435.1 | Symbols: | Expressed protein | chr3:1969121-1970... 625 2e-178
> AT3G06435.1 | Symbols: | Expressed protein | chr3:1969121-1970784
REVERSE LENGTH=1664
Length=1664
Score = 625 bits (338), Expect = 2e-178
Identities = 534/628 (85%), Gaps = 16/628 (3%)
Strand=Plus/Plus
Query 6 aaaaaaCCCAGCAACAATGTCCAAAAGATCTAAGGGTAAGAAAAATAGGaaaaaaaaGCC 65
||||| ||| ||||||||| |||||| ||||||| | || |||||| ||| |||| |
Sbjct 65 AAAAACCCCGGCAACAATGGCCAAAAAATCTAAGCGAAACCAAAATAATAAAGGAAAGAC 124
Query 66 GAAAATTCCCCAGAGAGTTGAAGTTTTTGGTGTGAACGATCCAGTAACCAGAACTGGTTG 125
||| |||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||
Sbjct 125 GAAGATTCCCCAGAGAGTTGAAGTGTTTGGTGTGAATGATCCAGTAACCAGATTTGGTTG 184
Query 126 GACTATCTTGGCTTTTCTCTGCGTTTTTGGAGCTGTGAGTGCTGTGAATGCCTTGAAGAT 185
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 185 GACTATCATGGCTTTTCTCTGCGTTTTTGGAGCTGTGGGTGCTGTGAATGCCTTGGAGAT 244
Query 186 CGAGATGTATGTCGGTTACAAGTATCTGGGAATGGTTGTTGTATCTCTCTATGTGATT-C 244
| ||||| ||||| | | ||||||| |||| |||||||| || ||||||||||| |
Sbjct 245 CCAGATGGATGTC---T-C--TTATCTGGTAATGTTTGTTGTAGCTATCTATGTGATTCC 298
Query 245 ACGTCTTGAC-TTCCATGTTCTCTGAAGCTCCATTTCCGGTTTACAGAGCACATCGATGG 303
| |||||| | |||||| |||||||||||||||| ||| |||||||||||||||||||||
Sbjct 299 A-GTCTTG-CATTCCATTTTCTCTGAAGCTCCATCTCCAGTTTACAGAGCACATCGATGG 356
Query 304 GTGAGAA-TGGTTGTCCCTCTGATACTGTTTAGCATAATCTACTTTACCGTCTTCAATTT 362
||||||| || || ||||||| |||||| ||| ||||||||||||||| |||||||||||
Sbjct 357 GTGAGAACTG-TTATCCCTCTCATACTGCTTACCATAATCTACTTTACTGTCTTCAATTT 415
Query 363 CCCAACCTTTGCCGTATCAGTTTTGATCCTATCAATTGTTTTTGGAATTTTTGTGTTGGT 422
|| |||| |||| | ||| ||||||||| ||||| | |||||||||||||| ||||||||
Sbjct 416 CCAAACCCTTGCAGCATCTGTTTTGATCATATCAGTGGTTTTTGGAATTTTCGTGTTGGT 475
Query 423 TCAGTTGGTTTTCCCAGTCGACGGATTTCACTTCTTTTATGTAGTGGTTATTTTGGTATT 482
||||||||||||||| || || ||||| |||| |||||||||||| | |||||| ||||
Sbjct 476 TCAGTTGGTTTTCCCTGTAGAAAGATTTTACTTTTTTTATGTAGTGCTCATTTTGTTATT 535
Query 483 TGGAGGTTTCTCTGCTCTCTATGCATGCT-ATTATGATCCAAAAATCCAGCCATTTTGGT 541
|||| | | ||| ||| | | ||| || | | |||||||| |||| |||||||||| |||
Sbjct 536 TGGATGCTGCTCAGCTGTATTTGC-TGGTCAGTATGATCCCAAAACCCAGCCATTTGGGT 594
Query 542 TCTGCTTTTTTACTCT-TTATGTTTTTGAATTGTTTATCTACTATTTCAACTATCCTGGA 600
||||| | || ||||| || |||||||||| ||||| |||||| |||| ||||||||||
Sbjct 595 TCTGCCTATTAACTCTCTT-TGTTTTTGAAATGTTTTTCTACTTTTTCTACTATCCTGGG 653
Query 601 CCAACTCATAGGGCATTCAGTTTCTATT 628
|| ||| |||||||||||| |||||||
Sbjct 654 CCTACTAATAGGGCATTCAAATTCTATT 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31396341875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5