BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928298
Length=1728
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06540.1 | Symbols: REP, AthREP | Rab escort protein | chr3:... 2765 0.0
> AT3G06540.1 | Symbols: REP, AthREP | Rab escort protein | chr3:2035003-2037788
REVERSE LENGTH=2016
Length=2016
Score = 2765 bits (1497), Expect = 0.0
Identities = 1658/1735 (96%), Gaps = 14/1735 (1%)
Strand=Plus/Plus
Query 2 CAAATCGGTTCGAGCCACCATGATCGACATCCCTCCTTACCCGCCGCTTGACCCTTCTAA 61
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 108 CAAATCTGTTCGAGCCACCATGATCGACATCCCTCCTTACCCGCCGCTTGATCCTTCCAA 167
Query 62 CTACGATCTCATCATCGTCGGCACCGGAGTCTCTGAGTCCGTCTTAGCCGCCGCTGCTTC 121
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 CTACGATCTCATTGTCGTCGGCACCGGAGTCTCTGAGTCCGTCTTAGCCGCCGCTGCTTC 227
Query 122 CTCCTCCGGTAGTTCTGTTCTCCACCTCGACCCTAACCCCTTCTACGGctctcacttcgc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 CTCCTCCGGTAGTTCTGTTCTCCACCTCGACCCTAACCCCTTCTACGGCTCTCACTTCGC 287
Query 182 ctctctttctcttcccgatctcacttctttccttcactcaaactccttttcttctcctcc 241
||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 288 CTCTCTTTCCCTTCCCGATCTCACTTCTTTCCTTCACTCAAACTCCGTTTCTCCTCCTCC 347
Query 242 GCCGCCGTCATCTCCTCCTCTCCCTCCGTCAAACAACCATGATTTCATCTCCGTGGATCT 301
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 348 GTCGCCGTCATCTCCTCCTCTCCCTCCGTCAAACAACCATGATTTTATCTCCGTGGATCT 407
Query 302 CGTTAACCGATCCTTGTATTCCCCCGTTGAGATTTCGAGCTTCGAATCGGAGATCCTCGA 361
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 408 CGTTAACCGATCCTTGTATTCCTCCGTGGAGATTTCGAGCTTCGAATCGGAGATCCTCGA 467
Query 362 AGAACACTCTAGAAGATTCAACGTTGACTTGTG-TGGTCCTAGGGTTGTCTTCTGTGCCG 420
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 468 AGAACACTCTAGAAGATTCAACGTTGACTTG-GCTGGTCCTAGGGTTGTCTTCTGTGCCG 526
Query 421 ATGAATCAATTAATCTCATGTTGAAATCAGGAGCTAACAATTACGTTGAGTTCAAGAGTA 480
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 527 ATGAATCAATTAATCTCATGCTGAAATCAGGAGCTAACAACTACGTTGAGTTCAAGAGCA 586
Query 481 TCGACGCGAGCTTCGTCGGGGATTCGAGCGGTAAGCTACGAAATGTGCCGGATTCGAGAG 540
|||| || |||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 587 TCGATGCCAGCTTCGTTGGGGATTCGAGCGGTGAGCTACGAAATGTGCCGGATTCGAGAG 646
Query 541 CTGCGATTTTCAAGGACAAGAGCTTGACTCTGTTGGAGAAGAATCGGCTCATGAAATTCT 600
|||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 647 CTGCTATATTCAAGGACAAGAGCTTGACTCTGTTGGAGAAGAATCAGCTCATGAAATTCT 706
Query 601 TCAAGCTTGTTCAGAGTCACTTGGCTTCGTCTACGGAAAATGATGATACAACAACAGTCA 660
||||||||||||| |||||||||||||| ||||| ||||| |||||| ||||||||||||
Sbjct 707 TCAAGCTTGTTCAAAGTCACTTGGCTTCTTCTACCGAAAAAGATGATTCAACAACAGTCA 766
Query 661 AGATATCGGAGGAAGACATGGAGAGTCCATTTGTGGACTTCTTGACAAAGATGCGTTTGC 720
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 767 AGATATCGGAGGAAGATATGGAGAGTCCATTTGTGGACTTCTTGTCAAAGATGCGTTTAC 826
Query 721 CACCCAAAATCAAATCGATCATCTTGTATGCCATTGCGATGCTAGATTATGATCAAGACA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 CACCCAAAATCAAATCGATCATCTTGTATGCCATTGCGATGCTAGATTATGATCAAGACA 886
Query 781 ATATGGAAACTTGTAGACATTTACTCAAGACCAAAGAGGGCATAGATCGAATGGCTCTAT 840
||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 887 ATACGGAAACTTGTAGACATTTACTCAAGACCAAAGAGGGGATAGATCGATTGGCTCTAT 946
Query 841 ACATCATATCTATGGGCAGGTTTTCTAACGCACTTGGGGCATTGATATACCCAATTTATG 900
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 947 ACATCACATCTATGGGCAGGTTTTCTAACGCACTTGGGGCGTTGATATACCCAATTTATG 1006
Query 901 GACAAGGAGAACTTCCACAAGCCTTTTGTCGTCGGGCTGCTGTCAAAGGATGTATCTATG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 GACAAGGAGAACTTCCACAAGCCTTTTGTCGTCGGGCTGCTGTCAAAGGATGTATCTATG 1066
Query 961 TTCTCCGGATGCCTATTACTGCTCTGCTTTTAGACAAGGAAACTGGGGGTTACAAAGGGG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TTCTCCGGATGCCTATTACTGCTCTGCTTTTAGACAAGGAAACTGGGGGTTACAAAGGGG 1126
Query 1021 TTAGATTAGCTTCTGGTCAAGAGATATTCAGCCAAAAGTTGATTCTGGATCCATGTGTTA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 TTAGATTAGCTTCTGGTCAAGAGATATTCAGCCAAAAGTTGATTCTGGATCCATGTGTTA 1186
Query 1081 CTGTTGGATTAGAGTCTCTGTCGTCATTGACAGATCAGCAAAATGAAACTCTCAGTGTTC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 CTGTTGGATTAGAGTCTCTGTCGTCATTGACAGATCAGCAAAATGAAACTCTCAGTGTTC 1246
Query 1141 TTGTCCCAAAGGCGTTGATCAATAAGGAGAAAGTAGCAAGAGGAATATGTGTCATTAGAG 1200
||||||||||| || ||||||||||||||||| | ||||||||| |||| ||||||||||
Sbjct 1247 TTGTCCCAAAGTCGATGATCAATAAGGAGAAAATTGCAAGAGGAGTATGCGTCATTAGAG 1306
Query 1201 GTTCTGTGAAAGCTGATGTATCAAACGCTCTTATCGTATATCCACCTAAATCTTTGTTTC 1260
|||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1307 GTTCTGTGAAAGCTAATGTATCAAACGCTCTTGTCGTTTATCCACCTAAATCTTTGTTTC 1366
Query 1261 CTGAACAGCTAACTGCAATTCGGGTTATGCAGCTTGGTAGTGGTTTAGCGGTTTGTCCTG 1320
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1367 CAGAACAGCTAACTGCAATTCGGGTTCTGCAGCTTGGTAGTGGTTTAGCGGTTTGTCCTG 1426
Query 1321 CTGACATGCATGTTTTATATCTTTCAACTTTGTGTGACAACGATGACCAAGGGATAAAGT 1380
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1427 CTGACATGCATGTTTTATATCTTTCAACTTTGTGCGACAATGATGACCAAGGGATAAAGG 1486
Query 1381 CGCTATTATCAGCCATGAGTAATCTCATTAGATTGCCTGATCCCGAGAATCATCAAAGCG 1440
|||||||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||
Sbjct 1487 CGCTATTATCAGCCATGAGTAATCTCATCAGTTTGCCTGTTCCCGAGAATCGTCAAAGCG 1546
Query 1441 ATTCCGTTGTTGAGAATGATACTTGTGAGGCAAAACCTATTCTACTCTGGAGAGCACTAT 1500
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
Sbjct 1547 ATTCCGTTGTTGAGAATGATACTTCTGAGACAAAACCTATTCTACTCTGGAGAGCACTGT 1606
Query 1501 ACGTGCAAGAGCTAGTCAAGGGTGAATATGGAGGTACTATCAGTTCCATGCCTAGTCCAG 1560
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1607 ACGTGCAAGAGCTAGTCAAGGGTGAATTTGGAGGTACGATCAGTTCCATGCCTAGTCCAG 1666
Query 1561 ATGGAAATTTGAACTACAATGAGATAGTGGAATCAGCCTTGAAGCTATATGAACAA-CTC 1619
||||||| |||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 1667 ATGGAAACTTGAACTACAATGAGATAGTGGAATCAGCCGTGAAGCTATATGAA-AAGCTC 1725
Query 1620 ATGGGGAGTGAAGAATTATTTAAAGAAGAGACCTCA--GT-GGAAAACACAACGGAGGA- 1675
|||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 1726 ATGGGGAGTGAAGAATTATTTAAAGAAGAGACCTCACCGGCGGAGAACACAACGGAGGAG 1785
Query 1676 -AAA-CGATGGTGGTGTTGACATAGAAGATTGATTGATTGATTGATGAAACCATT 1728
||| ||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 1786 GAAAACGATGGTGGTGTTGAAATAGAAGATTGATTGAT-GA---ATGAAACCATT 1836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85441327590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5