BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928304
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06580.1 | Symbols: GAL1, GALK | Mevalonate/galactokinase fa... 2595 0.0
> AT3G06580.1 | Symbols: GAL1, GALK | Mevalonate/galactokinase
family protein | chr3:2048905-2052025 REVERSE LENGTH=1885
Length=1885
Score = 2595 bits (1405), Expect = 0.0
Identities = 1491/1533 (97%), Gaps = 3/1533 (0%)
Strand=Plus/Plus
Query 1 AAAAGGAGAAACTTACAAAAATGGCGAAACCGGAACAAGTATCGGTCCCGATCTTCTCGT 60
|||||||||||| |||||||||||||||||||||| ||||||| |||||||||||| | |
Sbjct 140 AAAAGGAGAAAC-TACAAAAATGGCGAAACCGGAAGAAGTATCAGTCCCGATCTTCACAT 198
Query 61 CCCTTGAGCCTGTCTACGGCGAAGGATCTCTGCTCCAAGAAGCTACACAGCGATTCGATG 120
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 199 CTCTTGAGCCTGTCTACGGCGAAGGATCTCTGCTCCAAGAAGCTACACAACGATTCGATG 258
Query 121 TTTTGAAGGCCAATTTCAACCATGTCTTCGGTGCTTCACCCCAACTCTTCGCTCGCTCTC 180
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 259 TTTTGAAGGCCAATTTCAACGATGTCTTCGGTGCTTCTCCCCAACTCTTCGCTCGCTCTC 318
Query 181 CTGGAAGAGTGAATCTGATAGGAGAGCACATTGATTATGAAGGATACTCAGTGTTGCCAA 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 319 CTGGAAGAGTGAATCTGATAGGAGAGCACATTGACTATGAAGGATACTCAGTGTTGCCGA 378
Query 241 TGGCTATTCGTCAGGATACAATTATAGCGATTCGGAAATGTGAGGATCAAAAGCAGCTTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TGGCTATTCGTCAGGATACAATTATAGCGATTCGGAAATGTGAGGATCAAAAGCAGCTTC 438
Query 301 GGATTGCAAATGTTAATCATAAGTACACTATGTGTACATATCCTGCTGATCCTGACCAGG 360
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 439 GGATTGCAAATGTTAATGATAAGTACACTATGTGTACATATCCTGCCGATCCTGACCAGG 498
Query 361 AAATTGACTTGAAGAATCACAAATGGGGCCATTACTTCATTTGCGCGTACAAAGGATTTC 420
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 499 AAATTGACTTGAAGAATCACAAATGGGGGCATTACTTCATATGCGCGTACAAAGGATTTC 558
Query 421 ATGAGTATGCAAAGTCAAAAGGTGTGAATCTTGGTTCACTAGTTGGACTTGATGTGCTTG 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 559 ATGAGTATGCAAAGTCAAAAGGTGTGAATCTTGGTTCACCAGTTGGACTTGATGTGCTTG 618
Query 481 TTGATGGAATTGTTCCTACAGGTTCTGGGTTGTCAAGTTCTGCTGCCTTTGTTTGCTCAG 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 619 TTGATGGAATTGTTCCTACAGGTTCTGGGTTGTCAAGTTCTGCTGCATTTGTTTGCTCAG 678
Query 541 CAACAATTGCTATTATGGCTGTTTTTGGTCATAACTTTGACAAGAAAGAACTTGCACAGC 600
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 679 CAACAATTGCTATTATGGCTGTCTTTGGTCATAACTTTGAGAAGAAAGAACTTGCACAGC 738
Query 601 TTACATGTGAATGTGAACGACATATTGGAACACAATCTGGTGGGATGGACCAGGCAATCT 660
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 739 TTACATGTGAATGTGAAAGACACATTGGAACACAATCTGGTGGGATGGACCAGGCAATCT 798
Query 661 CTATTATGGCTAAAACTGGATTTGCTGAGCTTATTGACTTCAACCCAGTCCGTGCAACTG 720
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 799 CTATAATGGCTAAAACTGGATTTGCTGAGCTTATTGACTTCAACCCAGTCCGCGCAACTG 858
Query 721 ATGTGAAACTTCCTGATGGAGGGAGTTTTGTAATTGCACATTCTCTTGCAGAGTCGCAGA 780
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 ATGTGAAACTCCCTGATGGAGGGAGTTTTGTAATTGCACATTCTCTTGCAGAGTCGCAGA 918
Query 781 AGGCGGTCACGGCTGCTAAGAATTACAATAACAGGGTCGTTGAATGTCGACTTGCTTCGA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 AGGCGGTCACGGCTGCTAAGAATTACAATAACAGGGTCGTTGAATGTCGACTTGCTTCGA 978
Query 841 TCATACTTGGTGTTAAGCTCGGAATGGAACCAAAAGAAGCAATATCAAAAGTTAAGACTC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 TCATACTTGGTGTTAAGCTCGGAATGGAACCAAAAGAAGCAATATCAAAAGTTAAGACTC 1038
Query 901 TTTCTGATGTGGAGGGATTATGTGTGTCATTCGCTGGTGATCGTGGGTCATCTGATCCTC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 TTTCTGATGTGGAGGGATTATGTGTGTCATTCGCTGGTGATCGTGGGTCATCTGATCCTC 1098
Query 961 TTCTTGCTGTTAAGGAATATCTGAAAGAAGAACCATACACCGCTGAGGAGATTGAGAAAA 1020
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1099 TTCTTGCTGTTAAGGAATATCTGAAAGAAGAACCATACACGGCTGAGGAGATTGAGAAAA 1158
Query 1021 CCCTGGAGGAGAAATTACCATCAATCTTGAACAATGATCCAACATCTTTGGCTGTACTCA 1080
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1159 TCCTAGAGGAGAAATTACCATCAATCGTGAACAATGATCCAACATCTTTGGCTGTACTCA 1218
Query 1081 ATGCTGCCACGCATTTCAAATTGCATCAGAGAGCTGCACATGTTTATTCCGAAGCCCGGA 1140
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1219 ATGCTGCCACGCATTTCAAATTGCATCAGAGAGCTGCACACGTTTATTCCGAAGCCCGGA 1278
Query 1141 GGGTTCATGGTTTCAAGGACACAGTTGATTCAAACTTAAGTGACGAAGAGAAGTTAAAGA 1200
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1279 GGGTTCATGGTTTCAAGGACACAGTTAATTCAAACTTAAGTGACGAAGAGAAGTTAAAGA 1338
Query 1201 AACTCGGTGATCTCATGAATGAAAGCCATTACAGCTGCAGTGTCCTATACGAGTGCAGTT 1260
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 AACTTGGTGATCTCATGAATGAAAGCCATTACAGCTGCAGTGTCCTATACGAGTGCAGTT 1398
Query 1261 GCCCCGAGCTAGAAGAACTGGTTCAAGTTTGCAAGGAGAATGGAGCACTTGGAGCAAGAC 1320
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 GCCCCGAGCTAGAAGAACTTGTTCAAGTTTGCAAGGAGAATGGAGCACTTGGAGCAAGAC 1458
Query 1321 TGACAGGAGCTGGATGGGGCGGTTGCGCCGTGGCCTTGGTCAAGGAATCTGGCGTTACTC 1380
|||| ||||||||||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct 1459 TGACCGGAGCTGGATGGGGCGGTTGCGCTGTGGCCTTGGTCAAGGAATTTGACGTTACTC 1518
Query 1381 AATTCAT-CGCAGCAGTCAAGGAGAAATACTACAAAAAGAGAGTAGAGAAAGGAGTGGTA 1439
||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1519 AATTCATTC-CAGCAGTCAAGGAGAAGTACTACAAAAAGAGAGTAGAGAAAGGAGTGGTA 1577
Query 1440 AAAGAAGAAGATATGGAGCTTTACCTTTTTGCCTCCAAGCCTTCAAGTGGTGCTGCCATC 1499
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1578 AAAAAAGAAGATATGGAGCTTTACCTCTTTGCCTCCAAGCCTTCAAGTGGTGCTGCCATC 1637
Query 1500 TTCAACCTCTAAACACATCTCTCTCCCTCTTTA 1532
||||||||||||||||||||||||||||| |||
Sbjct 1638 TTCAACCTCTAAACACATCTCTCTCCCTCCTTA 1670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75602020770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5