BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928307
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06600.1 | Symbols: | unknown protein; Has 14 Blast hits to... 918 0.0
> AT3G06600.1 | Symbols: | unknown protein; Has 14 Blast hits
to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:2059431-2060483 REVERSE LENGTH=734
Length=734
Score = 918 bits (497), Expect = 0.0
Identities = 585/627 (93%), Gaps = 7/627 (1%)
Strand=Plus/Plus
Query 1 TTTGAAAACATTGGAGAGAGATGAAGGAAATTCAAATTCCCAGGAAAAACTTCGCGCGCT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 6 TTTGAAAACATTGGAGAGAGATGAAGGAAATTCAAATTCCCAGGAAAAGCTTCGCGCGCT 65
Query 61 CATCAGATCTCGGAGCTAAGAGACTCAAGGACCCTGAGATGAAGAATCGAAAGATTACGA 120
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 66 CATCAGAACTCGGAGCTAAGAGACTCAAGGATCCTGAGATGAAGAATCGGAAGGTTACGA 125
Query 121 CGGAGAAGAGACAGAGCGCAACATTTTCCGATGTATCTTTTGAAAGCACGAAGGATTCAA 180
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 126 CGGAGAAGAGACAGATCGCAACATTTTCCGACGTATCTTTTGAAAGCACGAAGGATCCGA 185
Query 181 TGGATTTTACTCCGATCTCTCAGATTTCTGGTCCGATCTCTGATTCCGAGGCTGAGAGTA 240
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 186 TGGATTTTAGTCCGATCTCTCAGATTTCTGGTGCGATCTCTGATTCCGAGGCTGAGAGTG 245
Query 241 TTATTATGCAAGGATCGAGCCCAGACTTATTGTCAACGCCTA-AAATTTGTCTTCCGGCA 299
||| | | ||||||||||||| ||||||| ||||||| || | | ||||||||||||||
Sbjct 246 TTA-T-T-CAAGGATCGAGCCTAGACTTAATGTCAAC-CCCAGAGATTTGTCTTCCGGCT 301
Query 300 GATGATTCTCCAGTTTCAACGATTACTAGTGTGGAGGCTCGTATTGACACTTCTTCTACT 359
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 302 GATGATTCTCCAGTTTCAACCATTACTAGTGTGGAGGCTCGTATTGACACGTCTTCTACT 361
Query 360 GATCGGATCCAGTCGATTGTGGACTTACCTGCTTCTGTGCAGTCCTTGCGTGCGGAGATA 419
|||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||||
Sbjct 362 GATCGGATCCAGTCGATTGTGGACTTGCCCGCTTCTGTGCAATCCTTGCGTGGGGAGATC 421
Query 420 AATGAGCTaaaaaaaCTGATCTGTTCGGCTGAAAATTCTGCAGAAATTAACTGGGTCGAC 479
|||||||| ||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 422 AATGAGCTGAAAAAACTGATCTGTTCAGTTGACAATTCTGCAGAAATTAACTGGGTCGAT 481
Query 480 GGAGTTGTTACTATGAAATTCCGCATTGTGCTTTTGAGTTTCATCCTTTGGGCTATCTTA 539
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 482 AGAGTTGTTACTGTGAAATTCCGCATTGTGCTTTTGAGTTTCATTCTTTGGGCTATCTTA 541
Query 540 GCTGCGATTGTGGTCTTCTTCAGCTCAGGAGAGGAA-GTTGCTTACCGTGGACTACTTCC 598
|||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 542 GCTGCGATTGTGGTCTTCTTCAGCTCAGGAGAGGAACGT-GCTTACCGTGGACCACTTCC 600
Query 599 AACATGATTCTGCAAGGTAATTTACTT 625
||||||||||| |||||||||| ||||
Sbjct 601 AACATGATTCTTCAAGGTAATTCACTT 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30140488200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5