BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928322

Length=690
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G06433.1 | Symbols:  | pseudogene of nodulin MtN3 family pro...   187    1e-46
  AT3G06660.1 | Symbols:  | PAPA-1-like family protein / zinc fin...  62.1    7e-09


> AT3G06433.1 | Symbols:  | pseudogene of nodulin MtN3 family protein 
| chr3:1958901-1962344 FORWARD LENGTH=3444
Length=3444

 Score =  187 bits (101),  Expect = 1e-46
 Identities = 122/132 (92%), Gaps = 2/132 (2%)
 Strand=Plus/Plus

Query  448  GACAAAATGCCGGAGG-GTACTAAGACCTTCAAATACATGCCGTTTTGGCTGTCGTTAGT  506
            ||||||||||||  || | |||||||||||||| ||||||||||||||||| ||||||||
Sbjct  75   GACAAAATGCCGCCGGAG-ACTAAGACCTTCAAGTACATGCCGTTTTGGCTATCGTTAGT  133

Query  507  TAGTTTCATCAACGCTGGAATTTGGACTGCTTATTCTTTGATCTACACAATTGATATTTA  566
            | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct  134  TCGTTTCATCAACGCTGGAATTTGGACTGCTTATTCTTTGATCTACATAATTGATATCTA  193

Query  567  CGTCCTTATAAG  578
            ||||||| ||||
Sbjct  194  CGTCCTTGTAAG  205


> AT3G06660.1 | Symbols:  | PAPA-1-like family protein / zinc finger 
(HIT type) family protein | chr3:2102402-2104906 FORWARD 
LENGTH=1755
Length=1755

 Score = 62.1 bits (33),  Expect = 7e-09
 Identities = 33/33 (100%), Gaps = 0/33 (0%)
 Strand=Plus/Minus

Query  1   TTGGCTTTAAGTGAAGGGTAAATGTGGAAGAGA  33
           |||||||||||||||||||||||||||||||||
Sbjct  57  TTGGCTTTAAGTGAAGGGTAAATGTGGAAGAGA  25



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33405707755


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5