BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928336
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06780.1 | Symbols: | glycine-rich protein | chr3:2143488-2... 1031 0.0
> AT3G06780.1 | Symbols: | glycine-rich protein | chr3:2143488-2144521
FORWARD LENGTH=1034
Length=1034
Score = 1031 bits (558), Expect = 0.0
Identities = 621/651 (95%), Gaps = 5/651 (1%)
Strand=Plus/Plus
Query 2 CGTCGGATTTGTAGATCATCATGGAGTTCTCTTTGATCGCCGACACAGTCACAGTTTGCA 61
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 127 CGTCGGATTTGTAGATCATCATGGAGTTCTCTTTGATCGCAGATACAGTCACAGTTTGCA 186
Query 62 CGGCTAAGCAAGGTATCGCGTTTGGGAAATCTCTTCTTCAAAGGTTGGATTTGGCCAATC 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 CGGCTAAGCAAGGTATCGCGTTTGGGAAATCTCTTCTTCAAAGGTTGGATTTGGCCAATC 246
Query 122 ACATTTCTTTCGCCGATTCTGTTGTTGATCATCAATCTCCCGGTGGAGGAATCGTTCAAG 181
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 247 ACATTTCTTTCGCCGATTCCGTTGTTGATCATCAATCTCCCGGTGGAGGAATCGTTCAAG 306
Query 182 CATCGGCGATTATCTTTCCC-GTTGATGCAATTGCTCCTCCACCTGTCAGATCTAGCTCT 240
||||||||||||| |||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 307 CATCGGCGATTAT-TTTCCCCGTCGATGCAATTGCTCCTCCACCGGTCAGATCTAGCTCT 365
Query 241 TATAAGACAATTCGCCGGATCCGTAAAAAGCGACGAACCAGGCGAGTTTCGTTTGGCGGT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 366 TATAAGACAATTCGCCGGATCCGTAAAAAGCGACGAACCAGGCGAGTTTCGTTTGGTGGA 425
Query 301 GATGGAGACGACGGAGGAGATTTTGGTCGTTTTCTGTTAGAAGGTGATTTCGGTGGTAAC 360
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 426 GATGGAGATGACGCAGGAGATTTTGGTCGTTTTCTGTTAGAAGGTGATTTCGGTGGTAGC 485
Query 361 GACGGTCCATTCGGATTTGGAGGCGGAGGAAACGACGGAGGTGGAAAGGGATGGAACTAC 420
||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 486 GACGGTCCATTTGGATTTGGAGGCGGAGGAAACGATGGAGGCGGAAAGGGATGGAACTAC 545
Query 421 GGCGGCGGCGGTGGTGGTGGTTTCGGGAGGGATAATTGGGATGGGTCTTCGTTTTCGTCG 480
||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 546 GGCGGCGGCGGCGGTGGT--TT-CGGGAGGGATAATTGGGATGGGTCTTCGTTTTCGTCT 602
Query 481 TGGTCAGATCCAGCAATGGAATTCGTGTACGAAGTGATCTGCTGGATCGCGTTGTCTAAT 540
|||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 603 TGGTCAGATCCAGCGATGGAATTTGTGTATGAAGTGATTTGCTGGATCGCGTTGTCTAAT 662
Query 541 TGTGTGCACTTTGCGTTCAAGAGGATAGTGAGGATCGTGACCGCCGGTGAAAGGGAGAAG 600
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 663 TGTGTGCACTTTGCGTTCAAGAGGATAGTGAGGATCGTGACCGACGGTGAAAGGGAGAAG 722
Query 601 TTGGACATTACATTATCTCCGGTGTGCTGACAAATTCGTTGTCGTAGTGAT 651
||| ||||| ||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 723 TTGAACATTGCATTATCTCCGGTATGCTGACAAATTCGTGGTCGTGGTGAT 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31496810169
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5