BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928343
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06850.1 | Symbols: BCE2, LTA1, DIN3 | 2-oxoacid dehydrogena... 2399 0.0
> AT3G06850.1 | Symbols: BCE2, LTA1, DIN3 | 2-oxoacid dehydrogenases
acyltransferase family protein | chr3:2157974-2160623
REVERSE LENGTH=1848
Length=1848
Score = 2399 bits (1299), Expect = 0.0
Identities = 1428/1491 (96%), Gaps = 5/1491 (0%)
Strand=Plus/Plus
Query 3 GACCAACCGTTAACAACAATGATCGCGCGACGGATCTGGCGGAGCCACCGGTTTCTCCGC 62
||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 141 GACCAACCGTTCATAACAATGATCGCGCGACGGATCTGGCGAAGCCACCGGTTTCTCCGC 200
Query 63 CCTTTCAGCTCGTCATCTGTTTGCGCTCCGCCGTTCCGGGTACCGGAGTATCTTTCTCAG 122
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 201 CCATTCAGCTCGTCATCTGTTTGCTCTCCGCCGTTCCGGGTACCGGAGTATCTTTCTCAG 260
Query 123 TCGTCTTCCTCTCCAGCGTCGCGCCCATTCTTTGTTCACCCTCCCACTTTGATGAAATGG 182
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 TCGTCTTCCTCTCCGGCGTCGCGCCCATTCTTTGTTCACCCTCCCACTTTGATGAAATGG 320
Query 183 TGTGGAGGAAGTAGAAGCTGGTTTTCTAACGAAGCCATGGCCATTGATTCAAATTCAGGG 242
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 321 GGTGGAGGAAGTAGAAGCTGGTTTTCGAACGAAGCCATGGCCACTGATTCAAATTCAGGG 380
Query 243 TTAATTGATGTGCCACTAGCACAAACTGGGGAAGGTATTGCTGAATGTGAGCTTCTCAAG 302
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 381 TTAATTGATGTGCCACTAGCTCAAACTGGGGAAGGTATTGCTGAATGTGAGCTTCTCAAG 440
Query 303 TGGTTTGTCAAAGAGGGAGATCCGGTAGAAGAGTTTCAGCCACTCTGTGAAGTTCAAAGC 362
||||||||||||||||||||| | || ||||||||||||||||||||||||||||| |||
Sbjct 441 TGGTTTGTCAAAGAGGGAGATTCTGTGGAAGAGTTTCAGCCACTCTGTGAAGTTCAGAGC 500
Query 363 GATAAAGCAACTATAGAGATAACAAGTCGTTTT-AAGGGCAAAGTGGCTCTGATTTCACA 421
|||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||
Sbjct 501 GATAAAGCAACTATAGAGATCACAAGTCGTTTTAAAGGG-AAAGTGGCTCTGATTTCACA 559
Query 422 CACTCCAGGTGACATTATTAAGGTTGGAGAGACTCTGGTTAGGCTGGCGGTGGAAGACTC 481
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 560 TTCTCCAGGTGACATTATTAAGGTTGGAGAGACTCTGGTTAGGTTGGCGGTTGAAGACTC 619
Query 482 GCAGGATTCGCTTCTTCTAACCTCTGATACTTCAGAAATTATAAATCTGGGCGGTTCAAA 541
|||||||||| ||||||||| |||||| |||||||||| ||| |||||| ||||||||
Sbjct 620 GCAGGATTCG---CTTCTAACCACTGATAGTTCAGAAATTGTAACTCTGGGAGGTTCAAA 676
Query 542 GCAGAGAACAGACAATCTTGTTGGAGCTCTCTCAACGCCTGCTGTTCGTAACCTTGCAAA 601
|||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 677 GCAGGGAACAGAAAATCTTCTTGGAGCTCTCTCAACGCCTGCGGTTCGTAACCTTGCAAA 736
Query 602 AGACCTTGGCATAGATATCAATGTCATAACTGGAACTGGTAAAGATGGAAGAGTTTTGAA 661
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 737 AGACCTTGGCATAGATATCAATGTTATAACTGGAACTGGTAAAGATGGTAGAGTTTTGAA 796
Query 662 AGAAGATGTTCTCCGATTTAGTGACCAGAAAGGATTTGTAACAGATTCAGTTTCTTCTGA 721
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 AGAGGATGTTCTCCGGTTTAGTGACCAGAAAGGATTTGTAACAGATTCAGTTTCTTCTGA 856
Query 722 GCATGCTGTTATAGGAGAAGACTCGGTTTCCACTAAAGCTAGTAGTAACTTTGAAGATAA 781
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 GCATGCTGTTATAGGAGGAGACTCGGTTTCCACTAAAGCTAGTAGTAACTTTGAAGATAA 916
Query 782 AACAGTTCCTCTAAGGGGATTCAGCCGAGCAATGGTCAAGACAATGACTATGGCTACAAG 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 AACAGTTCCTCTAAGGGGATTCAGCCGAGCAATGGTCAAGACAATGACTATGGCTACAAG 976
Query 842 TGTACCGCATTTTCATTTCGTTGAAGAGATAAACTGCGACGCACTTGTGGAGCTCAAGCA 901
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 977 TGTACCGCATTTTCATTTTGTTGAAGAGATAAACTGCGACTCACTTGTGGAGCTCAAGCA 1036
Query 902 ATTCTTTAAACAGAACAATACAGATTCCACCATCAAACACACTTTCCTTCCTACTTTAAT 961
||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1037 GTTCTTCAAAGAGAACAATACAGATTCCACCATCAAACACACTTTTCTTCCTACTTTAAT 1096
Query 962 CAAGTCACTGTCAATGGCTCTAACCAAATACCCCTTTGTGAATAGTTGCTTCAACGCAGA 1021
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 1097 CAAGTCTCTGTCAATGGCTCTAACCAAATATCCCTTCGTGAATAGTTGCTTCAACGCGGA 1156
Query 1022 ATCTCTCGAGATCATTCTCAAAGGTTCACATAACATTGGAGTTGCAATGGCCACTGAACA 1081
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1157 ATCTCTCGAGATCATTCTCAAAGGTTCACATAATATTGGAGTTGCAATGGCCACTGAACA 1216
Query 1082 TGGCCTTGTTGTTCCTAATATAAAGAATGTACAGTCATTATCTCTGCTAGAGATAACCAA 1141
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1217 TGGCCTTGTCGTTCCTAATATAAAGAATGTTCAGTCATTATCTCTGCTAGAGATAACCAA 1276
Query 1142 GGAGCTGTTGCGGTTACAACATTTGGCAACAAACAACAAACTTAACCCCGAGGATGTGAC 1201
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1277 AGAGCTGTCCCGGTTACAACATTTGGCAGCAAACAACAAACTTAACCCCGAGGATGTGAC 1336
Query 1202 TGGTGGAACCATAACTCTGAGTAACATTGGAGCAATCGGTGGGAAATTCGGATCCCCTCT 1261
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1337 TGGTGGAACCATAACTCTGAGTAACATTGGAGCAATTGGTGGTAAATTCGGATCCCCTCT 1396
Query 1262 TTTAAACTTACCGGAAGTTGCAATCATCGCTCTTGGAAGAATCGAGAAAGTTCCAAAATT 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 TTTAAACTTACCGGAAGTTGCAATCATCGCTCTTGGAAGAATCGAGAAAGTTCCAAAATT 1456
Query 1322 CTCAAAAGAAGGAACTGTTTATCCTGCATCGATAATGATGGTTAACATTGCTGCGGATCA 1381
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 CTCAAAAGAAGGAACTGTCTATCCTGCATCGATAATGATGGTTAACATTGCTGCGGATCA 1516
Query 1382 TAGAGTTCTAGACGGAGCAACAGTAGCTCGGTTTTGCTGCCAGTGGAAAGAGTATATCGA 1441
|||||||||||| || ||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1517 TAGAGTTCTAGATGGGGCAACGGTAGCTCGGTTTTGCTGCCAGTGGAAAGAGTATGTCGA 1576
Query 1442 GAAACCGGAGTTGCTGATGCTTCAAATGAGATAAGAAGGAAAGGTTCATGT 1492
|||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 GAAACCGGAGCTGCTGATGCTTCAAATGAGATAAGAAGGAAAGGTTCATGT 1627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73845001695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5