BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928349
Length=1448
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06910.1 | Symbols: ULP1A, ELS1, AtULP1a | UB-like protease ... 2078 0.0
> AT3G06910.1 | Symbols: ULP1A, ELS1, AtULP1a | UB-like protease
1A | chr3:2178630-2181197 REVERSE LENGTH=1793
Length=1793
Score = 2078 bits (1125), Expect = 0.0
Identities = 1345/1451 (93%), Gaps = 15/1451 (1%)
Strand=Plus/Plus
Query 1 GTTCCTTGTGTTTCAGACCAATGG--ATGGCATGAGCAGTTACCACAAACGCAATTCCGG 58
|||||| |||||||||||||||| |||| || | ||||||||||||| | ||||
Sbjct 101 GTTCCTACTGTTTCAGACCAATGGATATGG-AT--G--GTTACCACAAACGGAGCGCCGG 155
Query 59 TTTAAACCCTTGTAAAAACTCCAGTTTCTCACATTCATCAAGAGTCGTGGCTCCAGGAAT 118
|||||||||||||||| ||||| |||||||||||||||||||| | |||||||||||||
Sbjct 156 TTTAAACCCTTGTAAACACTCCGGTTTCTCACATTCATCAAGACCCATGGCTCCAGGAAT 215
Query 119 TTACCGTTACCCAGAAGTGAAGTCTCCATTGCGGAGACAAGTTCATGCGCCT-TCGCGGA 177
||||||||||||||||||||| ||| | |||||||||||||||||||||||| | |||||
Sbjct 216 TTACCGTTACCCAGAAGTGAAATCTTCGTTGCGGAGACAAGTTCATGCGCCTGT-GCGGA 274
Query 178 TCCTCAAGAGCGGTCGAGATCGTAGCACACGACAAGGTTCTGGTAATGTGTTGGGAACTT 237
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 275 TACTCAATAGCGGTCGAGATCGTAGCACACGACAAGGTTCTGGTAATGTGTTGGGAACCT 334
Query 238 TTCTCACAAGGAACGATGATATGTTGAAAAGAAATGCACTTGATTTGCCTTTGCGCTATA 297
|||||||||||||| |||| |||| |||||||||||||||||||| | |||| |||||||
Sbjct 335 TTCTCACAAGGAACAATGACATGTGGAAAAGAAATGCACTTGATTCGTCTTTACGCTATA 394
Query 298 GAACGGATAGAGAAGTGGTTGATGTTGGTGATGAGCTTGGAGATGTGGAAATGATATCTG 357
|||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||
Sbjct 395 GAACGGATAGAGAAGTAATTGATGTTGATGATGAGCTTGGAGATGTTGAAATGATATCTG 454
Query 358 ATGATACAAGTAGGGAGGGTCTCGGAAACGTGGCTATGGAGGTGGACGAGGTGGAAGAGA 417
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 455 ATGATACAAGTAGGGAGGGTGTCGAAAACGTGGCTATGGAGGTGGACGAGGTGGAAGAGA 514
Query 418 AGGCAGAGATGGGAAATGGATTGTTTTCTGAGGTTGTTAGTATGAAAAATGGGAGCTTAA 477
|||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 515 AGGCGGAGATGGGAAATGGATTGTTTTCTGAGGTTGCCAGTCTGAAAAATGGGAGCTTGA 574
Query 478 GGGTGGATGAATGTTCTCAAGATAATAGTAGTTCACTCGTTGTGAATCGCCCTGTGACCG 537
|||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| |
Sbjct 575 GGGTGGGTGAATGTTCTAAAGCTAATAGTAGTTCACTCGTTGTGAATCGCCCTGTGACTG 634
Query 538 ATGTCACGAGTTTTGAAGCATACAGAAAGGTTCTCCAGAGTGCTGAGAACCGGACTTCGA 597
||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||| |
Sbjct 635 ATGTCACAAGTTTTGAAGCATACAGAAAGGTTCTTGAGAGTGCTGTGAACCGGACTTCTA 694
Query 598 AACTGAAAGACAGAGGCTTTGGTGATATTTTGAAAGAAAGAGGTCGTGCTTTACTGCGAA 657
||||||||||||||||||||| |||| |||| ||||| ||||||||||||||||| ||||
Sbjct 695 AACTGAAAGACAGAGGCTTTGTTGATTTTTTTAAAGAGAGAGGTCGTGCTTTACTACGAA 754
Query 658 GCCTGttttctttttctttttGGAAACAAGATAAAGAACCAGTAGAGGATGTACAACGTG 717
| | || || ||| ||||||| ||||||| ||||||||||||||| |||||||||||
Sbjct 755 G-C--TTGTC---TTCCTTTTGGAGACAAGATGAAGAACCAGTAGAGGTTGTACAACGTG 808
Query 718 AGGCATTTCTAACTCTTTCTAGAGAGGAGGAGACAGCAGTCAACCGTGCATTCTCCGCTA 777
|||||||| || |||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 809 AGGCATTTGTACCTCTTTCTAGAGAGGAGGAGACAGCAGTCAGGCGTGCATTCTCAGCTA 868
Query 778 ATGACTCGAACATCTTGGTTGCACATGAGAATTCAAATATTGAAATTACAGGGAAAATCC 837
|||| || |||||||||||| | ||| |||| ||||||||||| ||||| |||||||||
Sbjct 869 ATGATTCAAACATCTTGGTTACTCATAAGAACTCAAATATTGATATTACCGGGAAAATCT 928
Query 838 TAAGGTGCCTTAAACCAGGTGAATGGTTGAACGATGAGGTCATTAATCTTTATCTGGTAT 897
| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 929 TGAGGTGCCTTAAACCAGGCAAATGGTTGAACGATGAGGTCATTAATCTTTATATGGTAT 988
Query 898 TGCTGAAAGAAAGGGAAGCTAGAGAACCAAAGAAGTTTCTTAAATGTCATTTTTTCAATA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 TGCTGAAAGAAAGGGAAGCTAGAGAACCAAAGAAGTTTCTTAAATGTCATTTTTTCAATA 1048
Query 958 CATTTTTCTTCACTAAGTTATTTAATTCGGGGACTGGATACAACTACAGCGCAGTCAGAA 1017
|||||||||||||||||||| ||||||||| ||||||||||||||| | ||||| ||||
Sbjct 1049 CATTTTTCTTCACTAAGTTAGTTAATTCGGCGACTGGATACAACTATGGTGCAGTGAGAA 1108
Query 1018 GATGGACATCAATGAAGAGGTTGGGCTATCATCTCAAAGACTGTGACAAGATATTTATCC 1077
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1109 GATGGACTTCAATGAAGAGGTTGGGCTACCATCTCAAAGACTGTGACAAGATATTTATCC 1168
Query 1078 CTATCCATATGAACATCCACTGGACTTTGGCTGTAATTAATATAAAGGACCAGAAATTCC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 CTATCCATATGAACATCCACTGGACTTTGGCTGTAATTAATATAAAGGACCAGAAATTCC 1228
Query 1138 AGTATCTTGACTCATTCAAAGGAAGGGAGCCTAAAATTCTCGATGCACTGGCTAGATACT 1197
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1229 AGTATCTTGACTCTTTCAAAGGAAGGGAGCCTAAAATCCTCGATGCACTGGCTAGATACT 1288
Query 1198 TTGTCGATGAAGTGAGGGACAAGAATGAAGTAGACCTTGATGTAAGTCGATGGGGACAAG 1257
||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct 1289 TTGTCGATGAAGTGAGGGATAAGAGTGAAGTAGACCTTGATGTAAGTCGATGGAGACAAG 1348
Query 1258 AATTTGTCCAGGACCTTCCGATGCAGAGAAATGGATTCGATTGTGGAATGTTTATGGTGA 1317
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 AATTTGTCCAGGACCTTCCAATGCAGAGAAATGGATTCGATTGTGGAATGTTTATGGTGA 1408
Query 1318 AATACATCGACTTCTACAGCAGAGGTTTGGATCTTTGTTTCACTCAGGAACAAATGCCAT 1377
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1409 AATACATCGACTTCTATAGCAGAGGTCTGGATCTTTGTTTCACTCAGGAACAAATGCCAT 1468
Query 1378 ATTTCCGGGATAGGACAGCGAAGGAGATTCTGCAACTGAAAGCCGAGTGATGTCAGCAAA 1437
||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 1469 ATTTCCGGGCTAGGACAGCAAAGGAGATTCTGCAACTGAAAGCCGAGTGATGCCAGCATA 1528
Query 1438 ATAAGGAAACT 1448
|||||||||||
Sbjct 1529 ATAAGGAAACT 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71385174990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5