BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928358
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06960.1 | Symbols: PDE320, TGD4 | pigment defective 320 | c... 2416 0.0
> AT3G06960.1 | Symbols: PDE320, TGD4 | pigment defective 320 |
chr3:2194208-2196547 REVERSE LENGTH=1654
Length=1654
Score = 2416 bits (1308), Expect = 0.0
Identities = 1424/1481 (96%), Gaps = 4/1481 (0%)
Strand=Plus/Plus
Query 1 CGGCGGCGGAAACGACGGCA-ATGAATAGACTGAGATGGGTCGGAGAGGGAGACATCTGG 59
|||||||||| ||||||| | ||||| ||| |||||||||||||||||||||||||||||
Sbjct 24 CGGCGGCGGAGACGACGG-AGATGAACAGAATGAGATGGGTCGGAGAGGGAGACATCTGG 82
Query 60 GACCTCGACATGTCAACCCCGGCAACACTCGAGGGTATCGCACGAGCTGTTCCCGACGAT 119
|||||||| |||||||| |||| || |||||||| | ||||||||||||||| ||||||
Sbjct 83 GACCTCGATATGTCAACTCCGGTGACGCTCGAGGGCACCGCACGAGCTGTTCCTGACGAT 142
Query 120 CCTCTTCCTCTAGGTCTCTCTAGAGGCACTCGTCTCTCTCGCCCTAAGCAAGTTGAGTTC 179
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 143 CCTCTTCCTCTAGGTCTCTCTAGAGGCACTCGTCTATCTCGCCCTAAGCAAGTTGAGTTC 202
Query 180 TTTCACCGCTTCATGACCTCACCTCTCATCCCTTCCTTCTCCCCTATCCGTCCCAACACC 239
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 TTCCACCGCTTCATGGCCTCACCTCTCATCCCTTCCTTCTCCCCTATCCGTCCCAACACC 262
Query 240 GGAGATGGAGGCTGTGGTGGATTCTCTCTTCAAAGAGTCCTCACTCTTCCTTTCTCCAAC 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 GGAGATGGAGGCGGTGGTGGATTCTCTCTTCAAAGAGTCCTCACTCTTCCTTTCTCCAAC 322
Query 300 AACTGGCTTGTGTCTCTTCTGGGCCAATTCGATGTTCAGAGATTCGTATCGGAGATAGAA 359
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 323 AACTGGCTTGTGTCTCTTCTGGGCCAATTCGATGTTCAGAGATTCGTAACGGAGATAGAT 382
Query 360 AAGACTAAAGCTTTTGGTCGAGGGTCTTCGTCTACGGTAGCTTCTCGTTTAAACACAATT 419
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 383 AAGACTAAAGCTTTTGGTCGAGGGTCTTCGTCTACAGTAGCTTCTCGTTTAAACACAATT 442
Query 420 GGCAAGCATTTGAAGGATAAATCTTTGTACGCATTGGGTTTTTGTTCTGAGTTCTTGTTA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 443 GGCAAGCATTTGAAGGATAAATCTTTGTACGCATTGGGTTTTTGTTCTGAGTTTTTGTTA 502
Query 480 TCACCAGATGATACTTTGCTTCTTAGCTACGATACTTACAAAGGTGATCTTGAAAAGAAT 539
||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||||
Sbjct 503 TCACCAGATGATACTTTGCTTCTTAGCTATGATGCTTACAAAGGTGATCTCGATAAGAAT 562
Query 540 CCTCGGGCTAAGGCTATCTTCAATCACGAGTTTCCGCTTCACAATCTGACAGCAGAGGCG 599
||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 563 CCTAGAGCTAAGGCTATCTTCAATCACGAGTTTCCGCTTCACAATCTGACAGCAGAAGCG 622
Query 600 GCTTGGCCTGGACTTTTTGTGGATAAACATGGTGAATATTGGGATGTGCCACTCTCAATG 659
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 GTTTGGCCTGGACTTTTTGTGGATAAACATGGTGAATATTGGGATGTGCCACTCTCAATG 682
Query 660 GCTATTGATCTAGCATCTCTTCCTGCTGAGTCTGGTCCAAGTTACCATGTATGTTTACAC 719
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 683 GCTATTGATCTAGCATCTCTTCCTGCTGAATCTGGTCCAAGTTACCATTTATGTTTACAC 742
Query 720 CATAACAGCGGAGCACCCAAGAAGTTAAATTCGGATACTATGGAAGTGCCTCCACCGTCA 779
|||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 743 CATAACAGCGGATCACCCAAGAAGTTACATTCTGATACTATGGAAGTGCCTCCACCGTCA 802
Query 780 CTGCTTCCTGGTTTGTCTCTGAAATCCGCAGTGTCTTATAGGACAAACATGGATCTCTGG 839
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 803 CTGCTTCCTGGTTTGTCTCTGAAATCTGCAGTCTCTTATAGGACAAACATGGATCTCTGG 862
Query 840 AGGGGTACCACTCCAAAGCTCGAAACTTGCAAGCCCTATGACGTCTTCCTCAGTAGTCCT 899
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 863 AGGGGTACCACTCCAAAGCTCGAAACTTGCAAGCCCTATGATGTCTTCCTCAGTAGTCCT 922
Query 900 CATGTCGCTGTATCTGGGATTATCGGCTCTGTGATGACCGCAGCATTTGGTGAAAATTCA 959
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 CATGTCGCAGTATCTGGGATTATCGGCTCTGTGATGACCGCAGCATTTGGTGAAAATTCA 982
Query 960 ATCAGATCAAAATCTGAGAATGATTCTGAGGGTGTTGGAGGGTTCTCTCTTCATTTTCCA 1019
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 ATCAGATCAAAATTTGAAAATGATTCTGAGGGTGTTGGAGGGTTCTCTCTTCATTTTCCA 1042
Query 1020 TCTGTAAATTCCGGATTCATGGCTGATGCCTTAGGGCGGGCATCACTCACAGCTCAATAT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 TCTGTAAATTCCGGATTCATGGCTGATGCCTTAGGGCGGGCATCACTCACAGCTCAATAT 1102
Query 1080 GGAAACTTCCAGAAGTCCTTCTTTGATCTCACCCGTTTCCATGCTAGATTAGACTATCCG 1139
|||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1103 GGAAACTTCCAGAAATTCTTCTTTGATCTCACCCGTTTCCATGCTAGATTAGACTTTCCG 1162
Query 1140 CATGGTTTGAGGTTTCTTACCGGTGCCACTAGCGTCGCACACGATCTTTTAAATTCTCGG 1199
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1163 CATGGTTTGAGGTTTCTTACCGGTGCCACTAGCGTCGCACAAGATCTTTTAAATTCTCGG 1222
Query 1200 CAGCCTAGTTTAGAAGCATTTCAGAAAATCTGCCCTGAAGTATTAGTTTCTCTACAGCAA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 CAGCCTAGTTTAGAAGCATTTCAGAAAATCTGCCCTGAAGTATTAGTTTCTCTACAGCAA 1282
Query 1260 CAGATTGTTGGACCGTTTAGTTTCAAAGTGGAGTCTGGAATTCAGATTGATCTGAAGAAC 1319
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||
Sbjct 1283 CAGATTGTTGGACCGTTTAGTTTCAAAGTGGAGTCTGGAATTGAGATCGATCTGAGGAAC 1342
Query 1320 GGAGCTAACCCCGTGACTGTAGATAAGACAGTATTTGCTATTGAATATGCTCTACAAGTG 1379
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1343 GGAGCTAACCCTGTGACTGTAGATAAGACAGTATTTGCTATTGAATATGCTCTTCAAGTG 1402
Query 1380 CTTCTTTCTGCCAAGGCTGTTGCTTGGTACTCCCCAAAACAGAAAGAATTCATGGTTGAG 1439
|||||||||||||||||||||| || |||||||||||||||||| || ||||||||||||
Sbjct 1403 CTTCTTTCTGCCAAGGCTGTTGTTTCGTACTCCCCAAAACAGAATGAGTTCATGGTTGAG 1462
Query 1440 CTTAGTTTCTTTGAGACATAGTATCAAGATTTTTTCCACTC 1480
||| |||||||||||||||||||||| |||||| ||||||
Sbjct 1463 CTTCGTTTCTTTGAGACATAGTATCAGGATTTT--CCACTC 1501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72991592430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5