BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928366
Length=256
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07005.1 | Symbols: LCR43 | low-molecular-weight cysteine-ri... 217 5e-56
> AT3G07005.1 | Symbols: LCR43 | low-molecular-weight cysteine-rich
43 | chr3:2212063-2212413 FORWARD LENGTH=237
Length=237
Score = 217 bits (117), Expect = 5e-56
Identities = 198/234 (85%), Gaps = 18/234 (8%)
Strand=Plus/Plus
Query 23 ATGAATTACAAGATTGGATTCATGAGCTTGCTCGTGATTACTTCAATAATCTTCCTCTTT 82
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATTATAAGATTGGAATCATGAGCTTGCTCGTGATTACTTCAATAATCTTCCTCTTT 60
Query 83 CTGATTCCAGATAAAGTAGAAGCGCAAACAGAATGCATTGCACCATGT-ACATTGGTTGG 141
||| |||||||||||||||||||||||| ||||||||||| ||||||| | || | ||
Sbjct 61 CTGGTTCCAGATAAAGTAGAAGCGCAAAAAGAATGCATTGGACCATGTGATAT-GTTTAC 119
Query 142 GGACTGT-ACGGCCGCTTGCATCAG-A--A--AA-GGATACACTGT-TGGTCAATGTGTT 193
||||||| | | |||||||| || | | | || ||||||| | | |||||||||||||
Sbjct 120 GGACTGTCAAG-CCGCTTGCGTCGGGATTAGGAAAGGATACAAT-TATGGTCAATGTGTT 177
Query 194 GGCTGGAAG-----G-ATGACGATCCCTTTATATGTTGTTGCAACTAATTGACT 241
| ||||||| | ||||||||||||||| |||||||||| || |||| |||
Sbjct 178 GCCTGGAAGCCCAAGGATGACGATCCCTTTACATGTTGTTGCTACAAATTAACT 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11662117768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5