BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928372
Length=2356
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07060.1 | Symbols: emb1974 | NHL domain-containing protein ... 3690 0.0
> AT3G07060.1 | Symbols: emb1974 | NHL domain-containing protein
| chr3:2232606-2237118 FORWARD LENGTH=2684
Length=2684
Score = 3690 bits (1998), Expect = 0.0
Identities = 2238/2354 (95%), Gaps = 15/2354 (1%)
Strand=Plus/Plus
Query 1 GTGAAGCCCACGATACAGGAATGTCTAACAGAAGCCTCCATTTGAAGAAAATTTCATGGC 60
||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 135 GTGAAGCCCACCATACAGAAATGTCTAACAGAAGCCTCCATTTGAAGAAAATATCATGGC 194
Query 61 TTTCTTCTCGGATTCTCTCAGACAATGTGCACGGTCGATTTCGCCGACCAATTACTACTC 120
|||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||
Sbjct 195 TTTCTTCTCGGATTCTCTCAGACAATGTTCACGGTCGATTTCGCCGATCAATCACTACTC 254
Query 121 CAGCCACTTGTTTAGCTCCTTCACTCGATGGAGACATGAACATTGGGTCCAAGACATTGG 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 255 CAGCCACTTGTTTAGCTCCTTCACTCGATGGAGACATGAACATTGGATCCAAGACATTGG 314
Query 181 TCGAAC-ACTGTTTCTCTCGCGGATTTGCATCAGTACGACGAGTATCTCGAG------ct 233
|||||| || |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 315 TCGAACAAC-GTTTCTCTCGCGGATTTGCATCAGTACGACGAGTATCTCGAGCTTCTTCT 373
Query 234 tcttcttcttcttctCCTTCCTCTCCACATGTTGATTTACTCTCTTATATTAAAGCTTCA 293
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 374 TCTTCTTCTTCTTCTCCTTCCTCTCCACATGTTGATTTGCTCTCTTTTATTAAAGCTTCA 433
Query 294 CTTGATAAACTTGAAGGTCCTTCCCATCATTGGTTGAATCGAGACATTGGGAATAAACAG 353
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 434 CTTGATAAACTTGAAGGTCCTTCCCATCATTGGTTGAATCGAGACTTTGGGAATAAACAG 493
Query 354 CTTTTCAAGGACAAAGGAACTTATGTAGTTCTTGCTGGACATTTGCTAAAC-GAGACAAG 412
|||||||||||||||||||||||||||||||| ||||||||||||||| || || |||||
Sbjct 494 CTTTTCAAGGACAAAGGAACTTATGTAGTTCTAGCTGGACATTTGCTAGACGGA-ACAAG 552
Query 413 TGATCTGAGTGGTTTCTTTGAGAAACTAAAGTTGCTTCAGCAGAGGTCTCCGGGTGTCTG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 TGATCTGAGTGGTTTCTTTGAGAAACTAAAGTTGCTTCAGCAGAGGTCTCCGGGTGTCTG 612
Query 473 TTTCATGTGCATTCACTTCAGTGATCAAGCTCGAATTGCTGATGATCGAACTGCTTTAGC 532
||||||| |||| ||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 613 TTTCATGGGCATCCACTTCAGTGATCAAGCTCGAATCGCTGATGATCGAACTGCTCTAGC 672
Query 533 TGAGTTGATTGTGAAGGAATACCTCACTTTTCCTGTACTACTTTCTGAAAAAGGATTTCC 592
|||||||||| ||||||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct 673 TGAGTTGATTTTGAAGGAATACCTCACTTTTCCTGTGCTACTTTCCGAAAAAGAATTTCC 732
Query 593 CAAGACAAGTGGGGAAGTACGTTACATCGTGTTTAAAGATTTTAAGAATCCTTTAATCTA 652
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 733 CAAGACAAGTGGGGAAGTACGTTACATCGTGTTTAAAGATTTTAAGAATCCTCTAATCTA 792
Query 653 CGAAGAGAAGGATCTCGATATTGCTTCTGTAGCTAAAGCTCTTGACAG---CCTCAGTCA 709
||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| |||
Sbjct 793 CGAAGAGAAGGATCTTGATATTGCTTCTGTAGTTAAAGCTCTTGACAGCCTCCTCACTCA 852
Query 710 AGATACTGAGAAATCCAAGTCTGTCAGAATTTTCACGAACACTTGGTCAAAACAAGCTGA 769
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 853 AGATACTGAGAAATCCAAGTCTGTCAGACTTTTCACGAACACTTGGTCAAAACAAGCAGA 912
Query 770 GGCTATCAAGGAATCACATTTCCCTTCTTTCTTTCAGGATTTGTTACTCTACTTTCCAGG 829
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 913 GGCTATCAAGGAATCACATTTCCCTTCTTTCTTTCAGGATTTGTTACTTTACTTTCCAGG 972
Query 830 TTGTATCACTGCAGACGAAGTTGGAGAACGTCTGTTTCTTTCTGATACCAACCATCATCG 889
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 973 TTGTATCTCTGCAGACGAAGTTGGAGACCGTCTGTTTCTTTCTGATACCAACCATCATCG 1032
Query 890 TATAATTATGTTCGAAAAGAATGGGAAGATTTTAGACAGTATTGGTTGTTTCCCAGGTTT 949
||| ||||| |||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 1033 TATTATTATTTTCGAAAACAGTGGGAAGATTGTAGACAGTATTGGTTGTTTCCCAGGTTT 1092
Query 950 TGAGGATGGAGAATTTGAATCTGCAAAGATGTTACGTCCTACAGGGGCCCTTTATGACGA 1009
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1093 TGAGGATGGAGATTTTGAATCTGCAAAGATGTTACGTCCTACAGGGACCCTTTACGACGA 1152
Query 1010 AGAGGAGGATTGCCTCTACATTGTAGATTCTGAGAATCACGCCATTAGAAGAGCAAATAT 1069
|| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 AGCGGAGGATTGTCTTTACATTGTAGATTCTGAGAATCACGCCATTAGAAGAGCAAATAT 1212
Query 1070 AAATAGCCGGGTCCTGGAAACAGTATATCCAAAGGTTATTAAGAAAAGTGGTGGCATATG 1129
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1213 AAATAGCCGGGTCCTGGAAACAGTATATCCAAAGGTTATTAAGAAAACTGGTGGCTTATG 1272
Query 1130 GTCTTGGGTAATGGAGAAAATGGGTCTTGGAAAAGAGGATGATATAACAGTTGATGCTGA 1189
||||||| |||||||||||||||||||||||||||| || |||| |||||||||||||||
Sbjct 1273 GTCTTGGATAATGGAGAAAATGGGTCTTGGAAAAGATGACGATACAACAGTTGATGCTGA 1332
Query 1190 TGCCAAATCAGAAGAATTTGATGCTCGCTCTCTGTTGTTTCCATGGCATATACTGAAGCG 1249
| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1333 TACCAAATCAGAAGAATTTGATGCACGCTCTCTTTTGTTTCCATGGCATATACTGAAGCG 1392
Query 1250 TAATGATGAGAGTCTTTTGGTCCTTAACAAAAGCTTTTCGAAGTTATGGATAATAAATTT 1309
| | |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1393 TGACGATGAGAGTCTTTTAGTCATTAACAAAAGCTTTTCGAAGTTATGGATAATAAATTT 1452
Query 1310 AGCTACAGGAGAGATCGAAGAAGTCGTGGAAGGGTTTTCGAAGATAATGGAGATCTGCGG 1369
||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1453 TGCTTCAGGAGAGATCGAAGAAGTTGTGGAAGGGTTTTCGAAGATAATTGAGATCTGCGG 1512
Query 1370 GCAATCAATCACAGAGAAGCTATCAGTGTTGAAACATATGCCTTCTAACTGGTTGCAACA 1429
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1513 TCAATCAATCACAGAGAAGCTATCAGTGTTGGAACATATGCCTTCTAACTGGTTGCAACA 1572
Query 1430 GCAAACTGAGGCTATCATCTCATGCAAGGAGCAGCCAAGTGCTTCCCTTTTATCTTCTTT 1489
|||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1573 GCAAACTGCGGCTATCGCCTCATTTAAGGAGCAGCCAAGTGCTTCCCTTTTGTCTTCTTT 1632
Query 1490 TACTAAACTTGGAGAAGACATTGTCATGACAGATATAGCTTGTCAGAGAGTTTTGAAGCT 1549
||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1633 TACTAAACTTGGAGACGACATTGTCATGACAGATATAGCTTGTCAGAGGGTGTTGAAGCT 1692
Query 1550 AAATATAGATTCTAGAGCATGCTCTAGCATTCAGTTCTCAAACATTGGGATCCTTGGGTT 1609
||||| ||||||| ||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1693 AAATAGAGATTCTGGAGCATGCTCTAGCATTCAATTCTCAAACAGTGGGATCCTTGGGTT 1752
Query 1610 GCCCTATTGGTTGTTCATTCCACTGGAGAGAGTTTTCAATCTAGCTAATGGTGTTCAGGA 1669
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1753 GCCCTATTGGTTGTTCATTCCACTGGAGAGAGTTTTTAATCTAGCTAATGGAGTTCAGGA 1812
Query 1670 AGCACATCTCAGTCATACTCAGGAACTCCGGTTATTGCCAGGTAAAATTAGCTTACGGTT 1729
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1813 AGCACATCTCAGTCATACTCAGGAACTCCGGTTATTGCCAGGTAAAATTAGCATACGGTT 1872
Query 1730 GAACATAGAGATTCCTCCATGCACGGAGCTTGTTGAACCGATACAAGAAAGCTGCATATG 1789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1873 GAACATAGAGATTCCTCCATGCACGGAGCTTGTTGAACCGATACAAGAAAGCTGCATATG 1932
Query 1790 GCGACAGACAAGAGGCGCAATCAGTGAAGTCTCGAGTGCTGGAAGTGCAGTTGAACCTTC 1849
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1933 GCGACAGACAAGAGGCGCAATCAGTGAATTCTCGAGTGCTGGAAGTGCAGTTGAACCTTC 1992
Query 1850 CGAAAAGGTTGGAGTTTCACAACAATGGTATGATGAATTAGACAGCCTCGCCAAAGAAAT 1909
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993 AGAAAAGATTGGAGTTTCACAACAATGGTATGATGAATTAGACAGCCTCGCCAAAGAAAT 2052
Query 1910 AGCCAACCCCGACGCAGTTGAGGAAGAGGAGGAGGAAGATGTTAACCCCTCTGAGGTTGA 1969
||||||||| || |||| |||||||||||| || ||||||||||||||||||||||||||
Sbjct 2053 AGCCAACCCTGAAGCAGCTGAGGAAGAGGAAGAAGAAGATGTTAACCCCTCTGAGGTTGA 2112
Query 1970 AAGAGAAGAAGATGGACGTATTCACATTGATTGTACTGTCAAAACCAGTCCTGGCTCAAG 2029
|||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||
Sbjct 2113 CAGAGAAGAAGATGGACGTATCCACATTGATTGTCCTGTCAAAACAAGTCCTGGCTCAAG 2172
Query 2030 TGAGCTTATTGTCTATGCAGCTTTGTATTTAAGACT-GTCGAGAAACAAAGAGACAGAAA 2088
|||||||||||| ||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 2173 TGAGCTTATTGTTTATGCAGCTTTGTATTTAAGACTAG-CGAGAAACGAAGAGACAGAAA 2231
Query 2089 GTGCGAGCCAGGAAGAACTGGCCAGAAAAATAGCAGAGATTTTAAAGCCAGTACGAAACA 2148
|||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| ||||
Sbjct 2232 GTGCGACCCAGGAAGAACTGGCGAGAAAAATAGCAAAGATTTTAAAGCCAGTACGGAACA 2291
Query 2149 TTACGACTATGAAGGAAGATTTGTTTGTGAAACTGTTGTCCAAGTCAAAGAGAGAATTGA 2208
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2292 TTACAACTATGAAGGAAGATTTGTTTGTGAATTTGTTGTCCAAGTCAAAGAGAGAATTGA 2351
Query 2209 GAGACATTGTCTTCTTGAAGCCGATGCATGTGCGGATAAGGTTAGACTCGATGGATCATC 2268
|||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2352 GAGACATTGTCTTCATAAAGCCGATGCATGTGCGGATAAGGTTAGACTCGAAGGATCATC 2411
Query 2269 CAAAAGCCGATAACTCAAGAGACGTAATCTTGACTGACTCCTCTGTTGAGGTTGATGTCT 2328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2412 CAAAAGCCGATAACTCAAGAGACGTAATCTTGACTGACTCCTCTGTTGAGGTTGATGTCT 2471
Query 2329 CTCTTTGACGACGA 2342
|||| |||| ||||
Sbjct 2472 CTCTCTGACAACGA 2485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116967269850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5