BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928387
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07170.1 | Symbols: | Sterile alpha motif (SAM) domain-cont... 1055 0.0
AT5G48680.1 | Symbols: | Sterile alpha motif (SAM) domain-cont... 283 1e-75
> AT3G07170.1 | Symbols: | Sterile alpha motif (SAM) domain-containing
protein | chr3:2280194-2282339 FORWARD LENGTH=1088
Length=1088
Score = 1055 bits (571), Expect = 0.0
Identities = 625/651 (96%), Gaps = 4/651 (1%)
Strand=Plus/Plus
Query 1 TCATCCAAGAGAGATAAAAGATGTATGCTGATAAACTGGAGGCTGAGTCTGGAAGCAGGA 60
||||||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 217 TCATCCAAG-GGGAT-AAAGATGTATGCTGATAAATTGGAGGCTGAGTCTGGAAGCAGGA 274
Query 61 AGGTCGTTAAGGATCGTATCAATGGCGGTTCTGGCGACATCTCTTCTCGCGTGCGACAAG 120
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 275 AGGTCGTTAAGGATCGTATCAATGGCGGTTCTGGAGACATCTCTACTCGCGTGCGACAAG 334
Query 121 TGACTGGGAAGAGGCAAAGGCAGGACGACAAATGGGAGCATGATCTTTTCAGTAGTGACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 TGACTGGGAAGAGGCAAAGGCAGGACGACAAATGGGAGCATGATCTTTTCAGTAGTGACA 394
Query 181 AACCTCAACTTTCAAATCGCAGAGTTGATCCTAGAGATCTTCGTTTGAAGCTCCAAAAGA 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 395 AACCTCAACTTTCAAATCGCAGGGTTGATCCTAGAGATCTTCGTTTGAAGCTCCAAAAGA 454
Query 241 GACATCATGTGTCTCAAAGTGGGCGAGAAGCTGGTTCAGGCGTGCGGGATTTACGGGAAA 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 GACATCATGGGTCTCAAAGTGGGCGAGAAGCTGGTTCAGGCGTGCGGGATTTACGGGATC 514
Query 301 AGCTCTCTGGGACAATGAATCTGCAACCAAAAAACAGTGACGCGCCAAAA-CCTAAAGCG 359
||||||||||||||||||||| ||||||||||||||||||| | |||||| || ||||||
Sbjct 515 AGCTCTCTGGGACAATGAATCAGCAACCAAAAAACAGTGACCCACCAAAATCC-AAAGCG 573
Query 360 GAGGCTGCTAGACCAAGTATGAAGAGCGTAGCTACTGAAACAGAGACTAGAAAAACTTCC 419
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 574 GAGGCTGCTAGGCCAAGTATGAAGAGCGTAGCGACTGAAACAGAGACTAGAAAAACTTCC 633
Query 420 ACTCAAGCTACCAGGAAGAAATCACAGCAGGCTGATTCATCTGTTGATAGCTTTCTGGAA 479
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 634 AGTCAAGCTACCAGGAAGAAATCACAGCAGGCTGATTCATCGGTTGATAGCTTTCTTGAA 693
Query 480 TCATTGGGTCTAGAGAAATATTCAACAGCTTTTCAAGTGGAAGAAGTTGATATGGATGCT 539
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 694 TCATTGGGTCTCGAGAAATATTCAACAGCGTTTCAAGTGGAAGAAGTTGATATGGATGCT 753
Query 540 CTCATGCATATGACAGATGATGACCTCAAGGCCATGCTCATACCAATGGGTCCGAGGAAG 599
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 754 CTCATGCATATGACAGATGATGACCTCAAGGCTATGCTCATACCGATGGGTCCGAGGAAG 813
Query 600 AAGATACTGCTTGCTTTGGGATCTAAACCCTAAGAGCTTAGTGCCTTCTAC 650
|||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 814 AAGATACTTCTTGCTTTGGGATCTAAACCCTAAGAGCTTAGTGCCATCTAC 864
> AT5G48680.1 | Symbols: | Sterile alpha motif (SAM) domain-containing
protein | chr5:19744431-19746190 REVERSE LENGTH=1052
Length=1052
Score = 283 bits (153), Expect = 1e-75
Identities = 482/632 (76%), Gaps = 58/632 (9%)
Strand=Plus/Plus
Query 21 ATGTATGCTGATAAACTGGAGGCTGAGTCTGGAAGCAGGAAGGTCGTT-AAGGATCGTAT 79
|||||| ||||| | ||| |||||| || || ||| || |||| ||| | ||| |
Sbjct 138 ATGTATTCTGATCTAGTGGTGGCTGAAACTAAAATCAGCAA-AACGTTCAAGAACCGTCT 196
Query 80 CAATGGCGGTTCTGGCGACATCTCTTCTCGC-G-----TGCGACAAGTGACTGGGAAGAG 133
|||||| ||||| || ||| ||||||||||| | | |||||| || |||||||
Sbjct 197 CAATGGTGGTTCCGGTGACTTCTCTTCTCGCGGCAAACAACAACAAGTCACAAGGAAGAG 256
Query 134 -GCAAAGGC-AG--GACGACAAATGGGAGCATGATCTTTTC--AGTA-G-TGACAAACCT 185
| ||||| || || || || |||||||||||||||||| || | | |||| | |||
Sbjct 257 AG-GAAGGCAAGATGATGATAAGTGGGAGCATGATCTTTTCGAAG-ACGATGACGAGCCT 314
Query 186 CAACTTTCAAATCGCAGAGTTGATCCTAGAGATCTTCGTTTGAAGCTCCAAAAGAGACAT 245
| |||||||| || |||||||| |||| ||||||||| |||||||||||||||| || |
Sbjct 315 CGGCTTTCAAAACGTAGAGTTGACCCTAAAGATCTTCGCTTGAAGCTCCAAAAGAAACGT 374
Query 246 CATGTG-TCTCAAA---GTGGGCGAGAAGCTGGT-TCAGGCGT-GCGGGATTTACGGGAA 299
|||| | || |||| |||| |||| | | || | | |||| || |||| |||| ||
Sbjct 375 CATG-GCTCGCAAATTGGTGGACGAGTATTTAGTGT-AAGCGTGGC-GGATCTACGAGAT 431
Query 300 AAGCTCTCTGGGACAATGAATCTGCAACCAAAAAACAGTGACGCGCCAAAACCTAAAGCG 359
||| | || ||||| |||||| | | |||| || | || || | |||| |
Sbjct 432 AAGTTATCCAGGACAGTGAATC--C-A-CAAACAA-A--GA----ACAGTA---AAAG-G 476
Query 360 GAGGCTGCTAGACCAAG-TATGAAG-A-G---C-GTAGCTACTGAAA-CAGAGACTAGAA 411
||||||| |||||| || || ||| | | | || | || ||| | |||||||||
Sbjct 477 GAGGCTGTTAGACC-AGCCATAAAGAAGGTTTCAGTGGGAAC-CAAACCCGAGACTAGAG 534
Query 412 AAACTTCC-ACTCA-AGCTACCAGGAAGAAAT-CACAGCAGGCTGATTCATCTGTTGATA 468
| ||| | | | |||||||| |||| || |||||||| |||| |||| |||||||
Sbjct 535 CGGC-TCCGAAT-AGAGCTACCAAGAAG-GATCCACAGCAGAATGATGCATCGGTTGATA 591
Query 469 GCTTTCTGGAATCATTGGGTCTAGAGAAATATTCAACAGCTTTTCAAGTGGAAGAAGTTG 528
|||| ||||||||||||||||| ||||||||||| || || |||||||||||||||||||
Sbjct 592 GCTTCCTGGAATCATTGGGTCTCGAGAAATATTCGACTGCATTTCAAGTGGAAGAAGTTG 651
Query 529 ATATGGATGCTCTCATGCATATGACAGATGATGACCTCAAGGCCATGCTCATACCAATGG 588
||||||||||||| | |||||||||||||||||||||||| || |||||||||||||||
Sbjct 652 ATATGGATGCTCTTAGGCATATGACAGATGATGACCTCAAAGCTTTGCTCATACCAATGG 711
Query 589 GTCCGAGGAAGAAGATACTGCTTGCTTTGGGA 620
| || |||||||||||||| ||||||||||||
Sbjct 712 GACCTAGGAAGAAGATACTTCTTGCTTTGGGA 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31496810169
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5