BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928388
Length=1843
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07180.1 | Symbols: | GPI transamidase component PIG-S-rela... 3005 0.0
> AT3G07180.1 | Symbols: | GPI transamidase component PIG-S-related
| chr3:2282233-2285513 REVERSE LENGTH=2060
Length=2060
Score = 3005 bits (1627), Expect = 0.0
Identities = 1771/1843 (96%), Gaps = 0/1843 (0%)
Strand=Plus/Plus
Query 1 TCTTCAACTCTAGGAAAGCACCGATGGAAGAAACCTCCGATCGTCTGAATCCGGGAATCA 60
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 16 TCTTCAACTCTCGGAAAGCACCGATGGAAGAAATCTCCGATCGTCTGAATCCGGGAATCA 75
Query 61 CGCCGGAGTTTGATCCGAAGACTATGCGTTCTACCAAACCTGGATTGAAGCGTCTCTTCA 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 76 CGCCGGAGTTTGATCCGAAGACTATGCGTTCCACCAAACCTGGATTGAAGCGTCTCTTCA 135
Query 121 TCACCACCTCTGTACTCTTTTCATTCCTTTTAGGTGTGCCATTTCTGTGGAAGTCAGTGG 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 TCACCAGCTCTGTACTCTTTTCATTCCTTTTAGGTGTGCCATTTCTGTGGAAGTCAGTGG 195
Query 181 AAATATATCGCTCTCCGTTACCGTTCCACGACATCGATTCGCTCTCCGATCAAATTGAGT 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 196 AAATATATCGCTCTCCGTTACCGTTCCACGACATCGATTCTCTCTCCGATCAACTTGAGT 255
Query 241 CTACTCCTTTGCGTTTCCCTTGCAATTTCCACGCTGTATTCGTCGGTTTCCCATCGACGG 300
| || |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||
Sbjct 256 CGACCCCTTTGCGTTTCCCTTGCAATTTCCACGCTGTTTTCGTCGGTTTTCGATCGACGG 315
Query 301 ATCCGGATAACTTACGATCTCAGATACAAGATGGTATAAATCAGTTAACTCATCAAAATT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 316 ATCCGGATAACTTACGATCTCAGATACAAGATGGTATAAATCAGTTAACTCATCAAAGTT 375
Query 361 CACAATGTGGTTCCTGCAATTTTTCCCTCTCTGTCACCGTTCAGAACCGAGATGACCAAT 420
||||||||||||| || ||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 376 CACAATGTGGTTCTTGTGATTTTTCCCTCTCTGTCACCGTTCAAAACCGAGAAGACCAGT 435
Query 421 GCTCTGAAACACTTGCTCACAGTTCTACCACGTGCTCTTACCGTTGTGGAGTGATCAAAA 480
||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 436 GCTCTGATACACTTGCGCATAGTTCTACCACGTGCTCTTACCGTTGTGGAGTGATCAAAA 495
Query 481 GAAATGTTTTTGGTGTGGGAGTGGATGAGACAGTGGATGAGTCTTTGAATGATGTGTTTA 540
|||||| |||| |||| ||| ||||||| |||||||||||||| |||||||||||||||
Sbjct 496 GAAATGGTTTTAGTGTTGGATTGGATGATACAGTGGATGAGTCACTGAATGATGTGTTTA 555
Query 541 GTGGCTGTTCTGAGGAGAGTGGGAAAGTGTACAGTGTTGTTGTGGTGAATAAAGAGAATG 600
|||||||||||||| | ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 556 GTGGCTGTTCTGAGAACAGTGGGAAAATGTACAGTGTTGTCGTGGTGAATAAAGAGAATG 615
Query 601 CCAATGGTGGGGATGAGGTAAAAGCTGTTGTGGGTAAGCGAAGGCATGCGTGGATTGTGG 660
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 616 CCAATGGTGGAGATGAGGTAAAAGCTGTGGTGGGGAAGCGAAGGCATGCGTGGATTGTGG 675
Query 661 GGAATGGATTAGAAGAAAGATATGGTGACATGGTGGCTAGAGTTTCTGAGATTTTCGTTA 720
| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 676 GCAATGGATTAGAAGAGAGGTATGGTGACATTGTGGCTAGAGTTTCTGAGATTTTCGTTC 735
Query 721 AGGTGTTTATGACTGGTGGAAGAGAAGAAGACTCAATTCAGGGAGAGTTTATGCCTGTTG 780
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 736 AGGTGTTTATGAATGGTGGAAGAGAAGAAGACTCAATTCAGGGAGAGTTTATGCCTGTGG 795
Query 781 GATCAGATGGGAGGATTGTTCTTTCGTTCAGTCTATTAAATTCTAATCCACGTGATTGGG 840
|||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 796 GATCAGATGGGAAGATTGTTCTTTCGTTCAGTCTTTTAAATTCCAATCCACGTGATTGGG 855
Query 841 TCTACGATTGGGACTTTCAAAGGATAGACGAGGCATTGTTGGCTCCAGTGACTAAGGCCT 900
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 856 TCTACGATTGGGACTTTCAGAGGATAGATGAGGCATTGTTGGCTCCGGTGACTAAGGCCT 915
Query 901 TAGCACCTATAGCTAATATAAGTGTTGAAAGTCAGGTTTTGTATCATACACCGAAGTCTT 960
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 916 TAGCACCTATAGCTAATATAACTGTTGAAAGTCAGGTTTTGTATCATACACCGAAGTCTT 975
Query 961 CTTTTTCATCTTGGGATAAAAAACTTCAGAGCTACATCTTTAGGACTAGTGATCTTCCCT 1020
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 976 CGTTTTCATCTTGGGATAAAAAACTTCAGAGCTACATCTTTAGGACCAGTGATCTTCCGT 1035
Query 1021 TTTTCGTGAATTCGAACGAATGGCACTTGGATACTTCTGCTGGAGCCAGTGGACGGTCCA 1080
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 TTTTTGTGAATTCGAACGAATGGCACTTGGATACTTCTGCTGGAGCCAGTGGACGGTCCA 1095
Query 1081 AAATACTGCAATTTGTGGTATATATTCCATCCGGAAAAGAATGCCCTCTTCTTTTGCAGT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 AAATACTGCAATTTGTGGTATATATTCCATCCGGAAAAGAATGCCCTCTTCTTTTGCAGT 1155
Query 1141 TACCAAATGGGGAGATATCTAAAACAAATGGCTTCATATCTCCGATGTGGGGCGGTGTGA 1200
| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1156 TGCCAAATGTGGAGATATCTAAAACAAATGGCTTCATATCTCCGATGTGGGGTGGTGTGA 1215
Query 1201 TTGTGTGGAACCCGGGAAATTGTAACAAGGACTCTGAAAGCCCAAGTAGGAACACGATAT 1260
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1216 TTGTGTGGAACCCGGGAAATTGTGACAAGGACTCTGAAAGCCCAAGTAGGAACACGATAT 1275
Query 1261 CGCCTCAGGATCTCGAGCAAATAGTTGAAATTTTCTTGGGACAATTCCGACAACTATTTG 1320
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1276 CGCTTCAGGATCTCGAGCAAATAGTCGAAATTTTCTTGGGACAATTCCGACAACTATTTG 1335
Query 1321 GCTTTAAGTCTGAAGCCATTTATACCAGTGGATTGGGCACTTACAAGATTTTACCTAGTG 1380
|||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1336 GCTTTAAGTCTGAAGCCAAATATACCACTGGATTGGGCACTTACAAGATTTTAACTAGTG 1395
Query 1381 AAAGAGGCTTTACAGAGTGGGAATTGGATGTCTTGTCACGGAAGCACACATGCTTCAATC 1440
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1396 AAAGAGGCTTTACAGAGTGGGAATTGGATGTCTTGTCACGGAAGCACACTTGCTTCAATC 1455
Query 1441 TCCATTCTTGTTCAACAACCCTCGGTTCTCTCTCTAGATTGGTTCGGTCACTCCCCAGGA 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 TCCATTCTTGTTCAACAACCCTCGGTTCTCTCTCTAGATTGGTTCGGTCACTCCCCAGGA 1515
Query 1501 TGATTATCAAGGATGAAATTGGAGAACAAGTGAAATATTCTCTGAAAGCAGCAAAGTTGG 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 TGATTATCAAGGATGAAATTGGAGAACAAGTGAAATATTCTCTGAAAGCAGCAAAGTTGG 1575
Query 1561 CTCAGTCTAATGCTTCTTTGGGAGGATACAGTTCTTCAGCCAGTTCATCAAGAGAAGCAA 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 CTCAGTCTAATGCTTCTTTGGGAGGATACAGTTCTTCAGCCAGTTCATCAAGAGAAGCAA 1635
Query 1621 GGTCTCTAGCCGAGAATGCCTTCTTCCATCCATCCATCATGTCCGTCAGCTACTTCTCTT 1680
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 GGTCTTTAGCCGAGAATGCCTTCTTCCATCCATCCATCATGTCCGTCAGCTACTTCTCTT 1695
Query 1681 ATGAACATTGCTTTGCAGTGTACTCACCATTTTTCCTGCCCGTGGCAGGACACGTTGTCC 1740
|||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||
Sbjct 1696 ATGAACATTGCTTTGCAGTGTACTCACCGTTTTTCCTGCCGGTGGTAGGTCACGTTGTCC 1755
Query 1741 TTGCAGCACTACGAGAATGGAGGAGATACAAACAAGAGAAGGCAAAGTACTTGACATGGC 1800
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1756 TTGCAGCAGTACGAGAATGGAAGAGATACAAACAAGAGAAGGCAAAGTACTTGACATGGC 1815
Query 1801 TAACCAGAAAGAAGACGGCCTAGGACTCTTTAGCATACTACAG 1843
||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1816 TAACCAGAAAGAAGACGACCTAGGACTCTTTAGCATACTACAG 1858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91214390265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5