BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928390
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07195.1 | Symbols: | RPM1-interacting protein 4 (RIN4) fam... 1009 0.0
> AT3G07195.1 | Symbols: | RPM1-interacting protein 4 (RIN4) family
protein | chr3:2288892-2290505 FORWARD LENGTH=941
Length=941
Score = 1009 bits (546), Expect = 0.0
Identities = 657/711 (92%), Gaps = 6/711 (1%)
Strand=Plus/Plus
Query 10 GATCAAGAAATATGGCAAACCGTCCACACGTTCCAAAGTTTGGGGACTGGAACAACCAAG 69
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 57 GATCAAGAAATATGGCAAACCGTCCACACGTTCCGAAGTTTGGGGACTGGAACAACCAAG 116
Query 70 ACCAACCATTCACGGTGGTCTTTGACAACGCAAGGACGAACAAACGACAAGACTTGTACG 129
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 117 ACCAACCATTCACGGTCGTCTTTGACAACGCAAGGACGAACAAACGACAAGACTTGTATG 176
Query 130 AATCTATTGAGAAACCTGAGACCAAACCTCAAGAACAAGCTCCTCCGCCTCCTCAGCCTG 189
||||||| |||||||| ||||||||||||||||| | ||||||||| |||||||||||||
Sbjct 177 AATCTATAGAGAAACCAGAGACCAAACCTCAAGAGCTAGCTCCTCCTCCTCCTCAGCCTG 236
Query 190 CTAGTAGAAATCAAAGACCGGAACCCCCAAAACCGGTCAAGGAGGACACGCCGAGAGCAC 249
|| |||||| ||||| ||||||| | ||||||||||| ||| | ||||||||||||||||
Sbjct 237 CTCGTAGAATTCAAAAACCGGAAGCACCAAAACCGGTTAAGCAAGACACGCCGAGAGCAC 296
Query 250 CTCCACCAGCGGaaaaaaaCAGAGTCAGAGCTCCACCGGCGGATCAACTCTACGAAGGCG 309
|||||||| | |||||||||||||||| |||||||||||| ||||||||||||| |||||
Sbjct 297 CTCCACCAACCGAAAAAAACAGAGTCAAAGCTCCACCGGCAGATCAACTCTACGGAGGCG 356
Query 310 GGGGCAGCGGAGGCGCAGGCAGGAGTGGAAGTGGAGGCGGAGGTGGACTATATGGAGGTT 369
||||||| ||||||| ||||||||||||||||||| ||| |||||| || ||||||||||
Sbjct 357 GGGGCAGTGGAGGCGGAGGCAGGAGTGGAAGTGGAAGCGCAGGTGGTCTTTATGGAGGTT 416
Query 370 ATGGAGGCGGATCAGTCGGGAACCAGCGGCAGCCACCAGCTCCTCGTCCTGCGCAGCCTA 429
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 417 ATGGAGGCGGATCAGTCGGGAACCAACGGCAGCCACCAGCTCCTCGTCCTACGCAGCCTA 476
Query 430 GACAAAATCTCAGAGGCGGCAACAACGGAAGGGGAGGGACAACGATACCGCCATTCCCAG 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GACAAAATCTCAGAGGCGGCAACAACGGAAGGGGAGGGACAACGATACCGCCATTCCCAG 536
Query 490 GATCACTAGGTGCAGGGGAGAACATGAGTTACACACACATTTTCGACAAAGTCAAAGAAG 549
||||| | |||||||||| | |||||||||||||||| |||||||| |||||||||||||
Sbjct 537 GATCAGTTGGTGCAGGGGGGGACATGAGTTACACACAAATTTTCGAGAAAGTCAAAGAAG 596
Query 550 AGAGAAACGAAGGTGTCA---GACCCTACGGCGGAACAGCCGGAAACACTCCTTCTCGCC 606
|||||||||||||||||| ||||| |||| ||||||||||| ||||||||||| ||||
Sbjct 597 AGAGAAACGAAGGTGTCATCAGACCCAACGGAGGAACAGCCGGCAACACTCCTTCCCGCC 656
Query 607 CCATCAACAGTCAACATGATCCATCTCCCAAACAAACCTCCTCCTCCATGTTCTGCTGCT 666
||||||||||||||||||||| |||| |||| |||||||| | |||| | ||||||||
Sbjct 657 CCATCAACAGTCAACATGATCAATCTACCAACCAAACCTC-T--TCCAAGGGCTGCTGCT 713
Query 667 TCTCATGGTGCCGCAAGGGATCTAAATATTGAAGACAATGTACATATTTAT 717
||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 714 TCTCATGGTGCCGCAGGGGAAGTAAATATTGAAGACAATGTACATATTTAT 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34812263871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5