BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928391
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07200.1 | Symbols: | RING/U-box superfamily protein | chr3... 782 0.0
> AT3G07200.1 | Symbols: | RING/U-box superfamily protein | chr3:2290762-2292492
FORWARD LENGTH=923
Length=923
Score = 782 bits (423), Expect = 0.0
Identities = 543/598 (91%), Gaps = 19/598 (3%)
Strand=Plus/Plus
Query 1 GTTGGCTTAACTCTGTGTTGAAAGATGACTTCTCGGGTGGTGAGGACTAATATGAGACTT 60
||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 170 GTTAGCTTAACTC--TGTTGAAAGATGGCTTCTCGGGTGGTGAGGACTAGTATGAGACTT 227
Query 61 CGAAGGAGGGATGGTGTGAATGTGTCTCAAAACGAACACCA--G-G------AAG-GGAC 110
|||||||||||||||||| | |||||||||||||||| | | ||| || |
Sbjct 228 CGAAGGAGGGATGGTGTG-A-----CTCAAAACGAACACCAGGGAGATCAACAAGTGG-C 280
Query 111 TGAACAAGCTCCAACGGTGCCTCAGATTGTGTCTACTCCTCCTAGGATCAATATAGTTGC 170
||| ||||||||||||||||||||||||||| |||||||||||||||||||| | |||||
Sbjct 281 TGACCAAGCTCCAACGGTGCCTCAGATTGTGGCTACTCCTCCTAGGATCAATGTGGTTGC 340
Query 171 TATTGAAGATGATGATGATGTTGTTGAATCAACTGCATCTGCTTTTGCTCAGGCTAAAAA 230
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 341 TATTGAAGATGATGATGATGTTGTTGAATCAACTGCTTCTGCTTTTGCTCAGGCTAAAAA 400
Query 231 CAAATCGAGAAGTGCACGCAGAGGGCCTGTAGTACTTGATGTAGAGTCAGGTGGCACTAA 290
|||||||||||||||||||||||| | |||| ||||||| ||||||| ||| ||||
Sbjct 401 CAAATCGAGAAGTGCACGCAGAGGATCACAAGTAGTTGATGTGGAGTCAGCTGGTGCTAA 460
Query 291 TAGAGGCACAAGGCGTCGCTCTGATCAAACTAGTGCTGACTCGGTTGAGCTTAACAAGCC 350
|||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 461 TAGATCCACAAGGCGTCGCTCTGATCAAACTAGTGTTGACTCAGTTGAGCTTAACAAGCC 520
Query 351 GAGAAAGTCCAAGGCTGTGGCTCCTCCTGTAGAGGAACCAAAATTTAACTGTCCAATCTG 410
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 521 GAGAAAGTCCAAGGCTGTGGCTCCTCCTGTAGAGGAACCAAAATTTAGCTGTCCAATCTG 580
Query 411 TTTGTGTCCATTTACTGAGGAGGTTTCAACGAAGTGTGGTCATATTTTCTGCAAAGCGTG 470
| |||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||
Sbjct 581 TCTGTGTCCATTTACTCAGGAGGTTTCAACGAAATGTGGTCATATTTTCTGCAAAAAGTG 640
Query 471 CATAAAGAATGCGTTATCTCTCCAAGCTAAATGCCCGACGTGTAGGaaaaaaaTCACTGC 530
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 641 CATAAAGAATGCGTTATCCCTCCAAGCTAAATGCCCGACATGTAGGAAAAAAATCACTGT 700
Query 531 TAAGGACCTTATCCGGGTATTCCTTCCAACTGCTAGATGAATCATACAGAAACATCAC 588
|||||||||||||||||| ||||||||||| | |||||||| |||||||||||||||
Sbjct 701 TAAGGACCTTATCCGGGTCTTCCTTCCAACCACCAGATGAATGATACAGAAACATCAC 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28432527202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5