BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928392
Length=1681
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07210.1 | Symbols: | unknown protein; Has 97 Blast hits to... 2680 0.0
AT5G26890.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 139 8e-32
> AT3G07210.1 | Symbols: | unknown protein; Has 97 Blast hits
to 85 proteins in 31 species: Archae - 0; Bacteria - 14; Metazoa
- 7; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes
- 20 (source: NCBI BLink). | chr3:2292798-2295452 REVERSE
LENGTH=2179
Length=2179
Score = 2680 bits (1451), Expect = 0.0
Identities = 1599/1670 (96%), Gaps = 11/1670 (1%)
Strand=Plus/Plus
Query 19 CAATGGGAGTGATATTGGACTCATGGTGCTTTTGTAAAGGAGTAGGCAAAAGCGAGAAGA 78
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 332 CAATGGGAGTGATATTGGACTCATGGTGCTTTTGTAAAGGAGTTGGCAAAAGCGAGAAGA 391
Query 79 TGAAAGCTTCCATTTTCT-CCGGCAAAGCTCCGGCGATGGCTCGAATCTCTGTCTCCGGA 137
|||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 392 TGAAAGGTTCCATTTT-TACCGGCAAAGCTCCGGCGATGGCTCGAATCTCTGTCTCCGGA 450
Query 138 CCAAATGGTGTTACTTCCGGCACCGGATTCCTCATTCACCGGAATCTTCTTCTGACCACT 197
||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 451 CCAAATGGTGTTACTTCTGGAACTGGATTCCTCATTCACCGGAATCTTCTTCTGACCACT 510
Query 198 CACCTCAATCTCCCTTCCATCTCCGCCACCGAAACCGCCGAGGTCCGCCTCCAGAACGGT 257
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 511 CACCTCAATCTTCCTTCCATCTCCGCCACCGAAACCGCCGAGGTCCGCCTTCAGAACGGT 570
Query 258 GTCGCCGCCGCTCTCTTCCCTCACAGGTTTTTCATTACAAGTTCGGTTATTGATCTCACT 317
||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 571 GTCGCTGCTGCTCTCTTCCCTCACAGGTTTTTCATTACGAGTTCAGTTATTGATCTCACT 630
Query 318 ATTGTTGGCTTAGACCTCGTTGATGGAGACTCAAATTCCCAGAGCCAAAC--C--CAACA 373
||||||||||||||||| |||||||||||||||| ||||||||||| ||| | |||||
Sbjct 631 ATTGTTGGCTTAGACCTTGTTGATGGAGACTCAAGTTCCCAGAGCC-AACTTCAACAACA 689
Query 374 ACCACATTACCTGAAGACATGTTCCAAACCAAACCTGGATCTAGGGAGTGTGGTGTACCT 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 ACCACATTACCTGAAGACATGTTCCAAACCAAACCTGGATCTAGGGAGTGTGGTGTACCT 749
Query 434 CTTAGGCTATGCCAATCAGAATGAACTCAAGATCGGCGAGGGAAAGTTAGTTGTAGCTAC 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 CTTAGGCTATGCCAATCAGAATGAACTCAAGATCGGCGAGGGAAAGTTAGTTGTAGCTAC 809
Query 494 CGACAATCTCATCAAGCTCTCGACTGATGAAATGATTTGGAGTCCTGGATCTGCTGGATT 553
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 810 CGACAATCTCATCAAACTCTCAACTGATGAAATGATTTGGAGTCCTGGATCTGCTGGATT 869
Query 554 TGATGTTCAAGGGAATCTCGCATTCATGATCTGTGATCCGAGGAAACTATCGACATCACC 613
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 870 TGATGTTCAAGGGAATCTTGCATTCATGATTTGTGATCCGAGGAAACTATCGACATCACC 929
Query 614 AACCTCAACCTCGACATCTTCCTCTTCGTCTTTGAAGAAAGATAACAACAAGACACTGAT 673
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 930 AACCTCAACCTCGTCATCTTCCTCTTCTTCTTTGAAGAAAGATAACAACAAGACACTGAT 989
Query 674 GATGCAGTTTGGTATACCAATACCAGTAATCTGTGACTGGCTGAATCAGCATTGGGAAGG 733
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 990 GATGCAGTTTGGTATACCAATACCAGTAATATGTGACTGGCTGAATCAGCATTGGGAAGG 1049
Query 734 TAGTTTGGATGAACATACGTC-AAAGCCCAAGTTGCCTCTTATTCGGTTAATGTCTTCTG 792
||||||||||||||||||| | ||| || ||||||||||| ||||| |||||||||||||
Sbjct 1050 TAGTTTGGATGAACATACGACGAAA-CCTAAGTTGCCTCTCATTCGATTAATGTCTTCTG 1108
Query 793 GTCAGAAGAGTGAGCGTTCTTGTACTTCATTCACCATGCGCCGTGTTTTCAAGCCAAACG 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 GTCAGAAGAGTGAGCGTTCTTGTACTTCATTCACCATGCGCCGTGTTTTCAAGCCAAACG 1168
Query 853 ACTCGGCTGATGTTGGAACGCCATCTTCATCTAACACTAGAGATCAAACTCATCCGAGCT 912
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 ACTCTGCTGATGTTGGAACACCATCTTCATCTAACACTAGAGATCAAACTCATCCGAGCT 1228
Query 913 CTTCCATCGCTGCTGAGGAAGAAAAAGAAGAAGAAACCTCAAAAACCAATCCACAAGGCG 972
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1229 CTTCTATCGCTGCTGAGGAAGAAAAAGAAGAAGAAACCTCAAAAACCAATCCACAAGTCT 1288
Query 973 GCGGGACTACTACTCATGCACAGGGTATCCCGACCCCTGAGATATATGAATCGCCAAAGT 1032
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1289 GCGGAACTACTACTCATGCGCAGGGTATCCCTACCCCTGAGATATATGAATCGCCAAAGT 1348
Query 1033 TGACTTCTGGTCCTTTAAGAAATGAGACAGGTCAAGTACACCTTTTGGACATCAACTTTC 1092
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1349 TGACTTCTGGTCCTCTAAGAAATGAGACAGCTCAAGTACACCTTTTGGACATCAACTTTC 1408
Query 1093 CTCCACGGATACCTAAAGCTACAACCATTCTTCCTGAGCTCAACTCTCTACAGGGTAACC 1152
||||||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||
Sbjct 1409 CTCCACGGATACCTAAAGCTATAACCTTTCATCCTGAGCTCAACTCTCTACAGAGTAACC 1468
Query 1153 ACGTAGTGGAAGACGCTGAGATTGTCTCTGAGGGATCAGATGCGCAGATTGCTTGGACAG 1212
| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1469 ATATAGTGGAAGAGGCTGAGATTGTCTCTGAAGGATCAGATGCGCAGATTGCTTCGACAG 1528
Query 1213 GTTCAGTAAACGGTGCTCTCAGTGAGGTCATCTCAAGTTCACCGCCAGTC-GCAGCACAC 1271
|||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 1529 GTTCAGTAAATGGTGCTCTCAGTGAGGTCATCTCAAGTTCACCGCCAG-CAGCAGCTCAC 1587
Query 1272 TATGTATATAACAATCATGGATACAGCAGCGAGGAAGAGACAATGTATTCTGCAGAAACA 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 TATGTATATAACAATCATGGATACAGCAGCGAGGAAGAGACAATGTATTCTGCAGAAACA 1647
Query 1332 GCAGAAAGCCGAAACTACCCAACTCCCCCAAGAAAAAGCGAGTTTCATCATGAGAGAGTT 1391
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1648 GCAGAAAGCCGAAACTACCCAACTCCTCCAAGAAAAAGCGAGTTTCATCATGAGAGAGTT 1707
Query 1392 GGAAGGAGCCAAAGCTGTGTGAGCTCCAGCAGATGGGGAACTCCTCAGAAGAGTTCGAAT 1451
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1708 GGAAGGAGTCAAAGCTGTGTGAGCTCCAGCAGATGGGGAACTCCTCAGAAGAGTTTGAAT 1767
Query 1452 GGTAGAAGAGAAATGCTGGAGAAACAGAGAAGCTTCGTCCATGGAAAGAAGATGTATTCA 1511
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1768 GGTAGAAGAGAAATGCTGGAGAAACAGAGAAGCTTCGTCCATGGGAAGAAGATGCATTCA 1827
Query 1512 CAAGGAACAATGTCACAGAGGAGTAATGACTATTACAGCCCAACTGTCTCATCCATCATG 1571
|||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1828 CAAGGAGCAATGTCACAGAGGAGTAATGACTATTACAGCCCAACGGTCTCATCTATCATG 1887
Query 1572 AAGAAAAGGAACAATAGTTCAGAGCAACAGATTTTCAAACCGGTACCTAGACCTAGAGCT 1631
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1888 AAGAAAAGGATTAATAGTTCAGAGCAACAGATTATCAAACCGGTACCTAGACCTAGAGCT 1947
Query 1632 ATTAGTTCTTCACCAAGATGGGCGTTCTGAGATCGATACAGACCCGAGAA 1681
||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 1948 GTTAGTTCTTCACCAAGATGGGCGTTCTAAGGTCGATACAGACCGGAGAA 1997
> AT5G26890.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:9460465-9460716
FORWARD LENGTH=252
Length=252
Score = 139 bits (75), Expect = 8e-32
Identities = 89/96 (93%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 190 TGACCACTCACCTCAATCTCCCTTCCATCTCCGCCACCGAAACCGCCGAGGTCCGCCTCC 249
|||||||||| ||||| ||||||||| ||||||||||| |||||||| | |||||||| |
Sbjct 101 TGACCACTCATCTCAACCTCCCTTCCTTCTCCGCCACCAAAACCGCCAAAGTCCGCCTTC 42
Query 250 AGAACGGTGTCGCCGCCGCTCTCTTCCCTCACAGGT 285
||||||||||||||||||||||||||||||||||||
Sbjct 41 AGAACGGTGTCGCCGCCGCTCTCTTCCCTCACAGGT 6
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83081901975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5