BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928396
Length=2317
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) fam... 713 0.0
> AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
| chr3:2300579-2308305 REVERSE LENGTH=3885
Length=3885
Score = 713 bits (386), Expect = 0.0
Identities = 552/629 (88%), Gaps = 24/629 (4%)
Strand=Plus/Plus
Query 1347 GAGAACTACTATAAGACCTTGCAAAACTCCCCGAAGCTTCTCCCTCGCTACTATAAAGAT 1406
||| |||||||||| | |||||||||||||||| || |||||||| ||||||||||||||
Sbjct 2848 GAGCACTACTATAACAACTTGCAAAACTCCCCGGAGATTCTCCCTGGCTACTATAAAGAT 2907
Query 1407 GTCAGTAAGATTACACGGCCTGGACTTGATGGAACGATGCGTTCCTCTACCCTACAGGAT 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2908 GTCAGTAAGATTACACGGCCTGGACTTGATGGAACGATGCGTTCCTCTACCCTACCGGAT 2967
Query 1467 ATGATTGAGGATCTTGATATGCTATCTTCTAGTGATTTTGATACGGTTGAGGTAACCAGT 1526
|| || ||||||||||||||||||||| || ||| ||||||| |||||||||||||||||
Sbjct 2968 ATAATCGAGGATCTTGATATGCTATCTCCTGGTGGTTTTGATTCGGTTGAGGTAACCAGT 3027
Query 1527 TTCATCTCCCAAGAATCTCAT-AGTGGGGGTATCCTCGTCGTTGCTGATGGCTACTTCAC 1585
|||| |||||||| |||||| | ||| ||| | ||| | || |||||||||||||||
Sbjct 3028 GTCATGTCCCAAGACTCTCATGACAAGGG-TATTCGCGTTGCTGTTGATGGCTACTTCAC 3086
Query 1586 TTCACAA-GAGAGACCTGCAAGGAACTTCACACAAAACTTCT-TTCTTGCTCCCCAAGAA 1643
|| ||| ||||| ||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 3087 TTT-CAACGAGAGGCCTGCAAGGAACTTCACACAAAACTTCACTT-TTGCTCCCCAAGAA 3144
Query 1644 AAAGGC-TACTTTGTTTTGTCTGACATGTTCAAGTTTGTTGACATCATCTCCGAGGCTAA 1702
|||||| | |||||||| | ||||||||||||||||||||| ||| | | ||||||||||
Sbjct 3145 AAAGGCCT-CTTTGTTTCGACTGACATGTTCAAGTTTGTTGGCAT-A-C-CCGAGGCTAA 3200
Query 1703 TG-ATGCGATAACT---G--AAGG-TGCAGCCATTTGCGTTAAAAAACTTCCTCCTGA-T 1754
|| | | || || | || ||| || |||||||||||||| ||||||| | | |
Sbjct 3201 TGCAACC-ATTCCTCCTGCTAATAATGCCGCAATTTGCGTTAAAAATCTTCCTC-TAAAT 3258
Query 1755 GCAACCATTACCTTAGTTGAGGATGCATTTAAGCAGTTTGGAGAAATTAGAAGAGGTGGA 1814
||||||||| |||| |||||| ||||||| ||||||||||||||||| ||||||||||||
Sbjct 3259 GCAACCATTGCCTTGGTTGAGAATGCATTCAAGCAGTTTGGAGAAATCAGAAGAGGTGGA 3318
Query 1815 GTTGAAGTTAGGCACAAAAGGAGCTTTTCTTATGGCTTTGTGGAGTTTAAGGAAGAAAGT 1874
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 3319 GTTGAAGTTAGAAACAAAAGGAGCTTTTCTTATGGCTTCGTGGAGTTTAAGGAAGAAAAT 3378
Query 1875 GCCGCCCAG-GCAGCAATAGAGGCTTCTCCTGTAATGTTTGATTGGCGTAGCGTTTACGT 1933
||||||||| | ||||||| ||||||||||||||| | |||||| |||||||||||||||
Sbjct 3379 GCCGCCCAGAG-AGCAATAAAGGCTTCTCCTGTAACGATTGATTTGCGTAGCGTTTACGT 3437
Query 1934 GGAGAAGAAGCGACCTGACTATATA-GAT 1961
||||||||||||||||||||||||| |||
Sbjct 3438 GGAGAAGAAGCGACCTGACTATATACGAT 3466
Score = 555 bits (300), Expect = 9e-157
Identities = 431/492 (88%), Gaps = 18/492 (4%)
Strand=Plus/Plus
Query 51 GTGGGGGATGAATTTGCAAGGCAATACTATCAGACCTTGCAAAACTCCCCGGAGAATCTC 110
||||||||||| ||||||||||| |||||| | |||||||||||| ||||||||||||||
Sbjct 841 GTGGGGGATGAGTTTGCAAGGCAGTACTATAACACCTTGCAAAACGCCCCGGAGAATCTC 900
Query 111 TATACGTTTTATAAAGATAACAGTACGATTTCACGGCCTGGACTAGATGGAACGATACGT 170
|||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 901 TATAAGCTTTATAAAGATAAGAGTACGATTTCACGGCCTGGACTAGATGGAACGATGCGT 960
Query 171 GTCTTCACTTTATCGGATGTGGATGAGAATGATCTTAAAATG-CAATCTTCTGATGGTTT 229
||||||||||||||| | | ||| | |||||| || | |||| ||| | ||||
Sbjct 961 GTCTTCACTTTATCG-A-----A--AGA-T---CTTAAA-TGGCGATCTCCTGGTAGTTT 1007
Query 230 TGATTCGGTTGTGATAACCAGTGTCACGTCCCAAGATTCTCATGAGCAGGGTTTCCTCGT 289
|||||||||| ||||||||| |||||||||||||| |||| | |||||||| |||||||
Sbjct 1008 TGATTCGGTTAAGATAACCAGCGTCACGTCCCAAGACTCTCTTAAGCAGGGTATCCTCGT 1067
Query 290 GGCTGTTTATGGCTGCTTCACTTTCAACGAGAGACCTGCAAAGCACTTCACACAAAGTGT 349
| ||||||||||| | |||||||||||||||||||||||| ||||||||||||| || |
Sbjct 1068 CGTTGTTTATGGCTACCTCACTTTCAACGAGAGACCTGCAAGGCACTTCACACAA-GTTT 1126
Query 350 -CTTTCTTGCTCCCCAAGAAGACGGCTACTTTGTTTTG-ACCGACATATTCAAGTTTGTT 407
|||||||| |||||||||| | |||||| |||||| | |||||||| |||| |||||||
Sbjct 1127 TCTTTCTTGTTCCCCAAGAAAAAGGCTACATTGTTT-GCACCGACATGTTCAGGTTTGTT 1185
Query 408 GATATACCCGAGGTTAATGCAGCCATTCCACCTGCTAATGATGTCACGGAGGAGAAAGTT 467
||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1186 GATATACCCGAGGCCAATGCAGCCATTCCTCCTGCTAATGATGTCATAGAGGAGAAAGTT 1245
Query 468 CCAGAAACGGAGGAAGCTGCACTGAGAGTTTCCGAACCAAGTCAAGGTTTTGAAAATGTT 527
||||||||||||| |||||| ||||||||||| ||||||| ||| |||||||| ||||||
Sbjct 1246 CCAGAAACGGAGGGAGCTGCTCTGAGAGTTTCTGAACCAAATCATGGTTTTGATAATGTT 1305
Query 528 CCCAAGCTATCT 539
||||||||||||
Sbjct 1306 CCCAAGCTATCT 1317
Score = 287 bits (155), Expect = 4e-76
Identities = 179/190 (94%), Gaps = 3/190 (2%)
Strand=Plus/Plus
Query 1046 GAGAGGAACAGAAGTTTATGACTTGCACAACTGGCAAAAGATTATGGATCAATCGGAGGA 1105
|||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1998 GAGAGGAACAGATGTTTATGACTTGCAAAACTGGCAAAAGATTATGAATCAATCGGAGGA 2057
Query 1106 GCAGATGAAGTTTCAGGAGGAACAAGGACGACAATACAATCACAACAGATATACAAGCGA 1165
|||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 2058 GCAGATGAAGTTTCAGGAGGAAGAAGGGCGACAATACAATCAAAACAGATATACAAGCGA 2117
Query 1166 GGAAGTGAGAGGAACAGAAGAATTTGGTCTGga--a-gaagaagaagaagaagagaaCCA 1222
|||||||||||||||||||| | |||||||||| | |||||||||||||||||||||||
Sbjct 2118 GGAAGTGAGAGGAACAGAAGGAGTTGGTCTGGAGGAAGAAGAAGAAGAAGAAGAGAACCA 2177
Query 1223 AAACTGGGAG 1232
||||||||||
Sbjct 2178 AAACTGGGAG 2187
Score = 270 bits (146), Expect = 4e-71
Identities = 425/549 (77%), Gaps = 62/549 (11%)
Strand=Plus/Plus
Query 1714 CTGAAGGTGCAGCCATTTGCGTTAAAAAACTTCCTCCT-GATGCAACCATTACCTTAGTT 1772
|||| |||||||||||||||| ||||||||||||| || |||||||||||| |||| |||
Sbjct 1325 CTGAGGGTGCAGCCATTTGCGCTAAAAAACTTCCT-CTAGATGCAACCATTGCCTTTGTT 1383
Query 1773 GAGGATGCATTTAAGCAGTTTGGAGAAATTAGAAGAGGTGGAGTTGAAGTTAGGCA-CAA 1831
||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1384 GAGAATGCATTTAAGCAGTTTGGAGAAATTAGAAGAGGTGGAGTTGAAGTTAGA-ATCAA 1442
Query 1832 AAGG-AGCTTTTCT------TATGGCTT-TGTGGAGTTT-AAGGAAGAA-AGTGCCGCC- 1880
|| | || | || |||| ||| |||||||||| ||| ||| | || |||||
Sbjct 1443 CTGGCA-CTGTACTGGGAAATATG-CTTATGTGGAGTTTGAAG-AAGCAGAG-GCCGCTA 1498
Query 1881 -CAGGCAGCAATAGA-GGCTTCTCCTGTAATGT-TTGATTGGCGTAGC-GT--TTACGTG 1934
|||| |||||| | ||| |||||| ||| || ||||| || ||| | | |||||||
Sbjct 1499 ACAGG--GCAATA-ATGGCGTCTCCTATAA-GTATTGAT-GG-GTA-CAGAACTTACGTG 1551
Query 1935 GAGAAGAAGCGACCTGACTATATAGATGAAGAATCACTGAGAGTTTATGAACCAGAGGAT 1994
||||||||| || | || || | || || ||| | | | || | ||| | || | |
Sbjct 1552 GAGAAGAAGT-AC--G-CT-TACA-ATAAA-AAT-A-TAAAAGCTGATG--C-AG-G--T 1596
Query 1995 GATGATACTGGAAATGAGAATAATCAAGAGTCTCAAGCGTTATA--TGAGAGTTGTGCAG 2052
| |||||||||||||| ||| | ||| || |||||||| | ||| ||| || || ||
Sbjct 1597 GCTGATACTGGAAATGGGAACAGTCAGGACTCTCAAGC-T-ATAACTGA-AGATGCACAC 1653
Query 2053 -TTCACGTTAGAA-ACCTTCCTCCAAATGCAACCACTGACTGGGTAGAGAATGCATTTGA 2110
||| || | || |||||||||||||||||||| || || ||| |||| || |||| |
Sbjct 1654 ATTCGTGTAA-AAGACCTTCCTCCAAATGCAACCGTTGCCTTGGTTGAGAGTGTATTTAA 1712
Query 2111 GCAGTTTGGACCAATCAAAAGAGG-AGGAGTTCAAGTTTTTAACCCTGGT--TTGGA-CG 2166
||||||||||||||| |||| ||| | || ||| |||| | ||||||| | || || |
Sbjct 1713 GCAGTTTGGACCAATTAAAA-AGGGACGAATTCGAGTTATAAACCCTGCTAATTCGAACT 1771
Query 2167 ATTGGTTTGGTTTTGTGTG-GTTTGTGCACGCAGATGCTGCCGAGAGCGCAGTAAAGGCA 2225
|||||| || ||||||| | ||||| | | |||||||||||| |||| ||| || ||||
Sbjct 1772 ATTGGTATGCTTTTGTG-GAGTTTGAGGAAGCAGATGCTGCCAAGAGAGCAATACAGGCG 1830
Query 2226 TCTCCTCTA 2234
|||||||||
Sbjct 1831 TCTCCTCTA 1839
Score = 261 bits (141), Expect = 2e-68
Identities = 194/219 (89%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 2003 TGGAAATGAGAATAATCAAGAGTCTCAAGCGTTATATGAGAGTTGTGCAGTTCACGTTAG 2062
|||||||||||||||||||||| ||| |||||||||| | ||||||||||||||
Sbjct 3549 TGGAAATGAGAATAATCAAGAGCCTCGAGCGTTATAT----G--CTGCAGTTCACGTTAA 3602
Query 2063 AAACCTTCCTCCAAATGCAACCACTGACTGGGTAGAGAATGCATTTGAGCAGTTTGGACC 2122
||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||
Sbjct 3603 AAACCTTCCTCCAAATGTAACCACTGACTGGGTAGAGAACGCATTTAAGCAGTTTGGACC 3662
Query 2123 AATCAAAAGAGGAGGAGTTCAAGTTTTTAACCCTGGTTTGGACGATTGGTTTGGTTTTGT 2182
|||||||||||||||||||||||||| ||||| |||| ||| | ||||||||||| |||
Sbjct 3663 AATCAAAAGAGGAGGAGTTCAAGTTTCTAACCGTGGTGTGGGCAATTGGTTTGGTAATGT 3722
Query 2183 GTGGTTTGTGCACGCAGATGCTGCCGAGAGCGCAGTAAA 2221
| ||||||||| |||| |||||||||||| ||||||||
Sbjct 3723 GAAGTTTGTGCATGCAGCTGCTGCCGAGAGAGCAGTAAA 3761
Score = 246 bits (133), Expect = 6e-64
Identities = 328/418 (78%), Gaps = 30/418 (7%)
Strand=Plus/Plus
Query 616 GAAATGGGAACAGTCAGGAGTCTCGAGCGGTATCTGAGGCATGCATTTA-TC-T-TCATT 672
||||||||||||||||||| |||| ||| || |||| | ||||| | || | | |
Sbjct 1607 GAAATGGGAACAGTCAGGACTCTCAAGCTATAACTGAAG-ATGCACACATTCGTGTAAAA 1665
Query 673 G-GCTTCCTACAAAAACAACCGTTGCCTTGGTTGAGAATGCATTTAAGCAGTTTGGAAAA 731
| |||||| |||| ||||||||||||||||||||| || |||||||||||||||| |
Sbjct 1666 GACCTTCCTCCAAATGCAACCGTTGCCTTGGTTGAGAGTGTATTTAAGCAGTTTGGACCA 1725
Query 732 ATT-AGAAGAGGTGGAGTT-GAACTTA-GAA----GCAAAAAGAGATA-TAAAGGGAAAT 783
||| | ||| || || || | | ||| || || || || | | | || |
Sbjct 1726 ATTAAAAAG-GGACGAATTCG-AGTTATAAACCCTGC-TAATTCGA-ACT-ATTGG---T 1777
Query 784 ATGCTTATGTGGAGTTTGAGGAAGCAGAGGCCGCCAACAGGGCAATA-ATGGCGTCTCCT 842
|||||| ||||||||||||||||||||| || ||||| || |||||| | ||||||||||
Sbjct 1778 ATGCTTTTGTGGAGTTTGAGGAAGCAGATGCTGCCAAGAGAGCAATACA-GGCGTCTCCT 1836
Query 843 CTAAGTATTTTTGGGTACAGAA-TTACCGTGCAGAAGAATCGATCTTACCT-TAAAGGTT 900
|||| | || ||| ||| || ||| |||| || |||| | | | || || | ||||||
Sbjct 1837 CTAAATGTTGATGGCCACACAACTTA-CGTGGAGCAGAAGCAACCATA-CTATGAAGGTT 1894
Query 901 ACTGTGAAATTCCATCCGCTGGACCAGGAAACATACACAGAGGCGAGGGAGTGAGAGGAT 960
||| ||||| |||||||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct 1895 ACTATGAAAGTCCATCCGATGGACCAGGAAACATAAAGAGAGGCGAGGGAGTGAGAGGAT 1954
Query 961 CACTAGGTAACCCCTTTTATAACTGGCAGAAGATGATGGAGGAAGTGAGAGAAACAGA 1018
|||||||||| ||| ||| |||||||||||||||| | |||||||||||| ||||||
Sbjct 1955 CACTAGGTAATCCCATTTGTAACTGGCAGAAGATG--G-AGGAAGTGAGAGGAACAGA 2009
Score = 104 bits (56), Expect = 4e-21
Identities = 78/89 (88%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 1240 CGGAGGAACAGGGGAAGATTCAGGAGGAAGAAGGGCGACAATACAATCAGAACAGATATA 1299
||||||| ||| |||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2051 CGGAGGAGCAGATGAAGTTTCAGGAGGAAGAAGGGCGACAATACAATCAAAACAGATATA 2110
Query 1300 CAAGGGAGCAAATGAAAGAAACAGGAGGA 1328
|||| ||| || ||| || ||||| ||||
Sbjct 2111 CAAGCGAGGAAGTGAGAGGAACAGAAGGA 2139
Score = 87.9 bits (47), Expect = 4e-16
Identities = 85/103 (83%), Gaps = 4/103 (4%)
Strand=Plus/Plus
Query 780 AAATATGCTTATGTGGAGTTTGAGGAAGCAGAGGCCGCCAACAGGGCAATAATGGCGTCT 839
|||| ||||| |||||| || ||| ||||||| | |||||||||||||||||||||||||
Sbjct 2350 AAATTTGCTTTTGTGGACTTCGAGAAAGCAGATGTCGCCAACAGGGCAATAATGGCGTCT 2409
Query 840 CCTCTAAGTATTTTTGGGTACAGAA--TTACCGTGCAGAAGAA 880
||| | || |||| || | | | || ||| ||||||||||||
Sbjct 2410 CCTGTGAGGATTTGTGAGAA-A-AACGTTAACGTGCAGAAGAA 2450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115009448595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5