BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg928396 Length=2317 Score E Sequences producing significant alignments: (Bits) Value AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) fam... 713 0.0 > AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein | chr3:2300579-2308305 REVERSE LENGTH=3885 Length=3885 Score = 713 bits (386), Expect = 0.0 Identities = 552/629 (88%), Gaps = 24/629 (4%) Strand=Plus/Plus Query 1347 GAGAACTACTATAAGACCTTGCAAAACTCCCCGAAGCTTCTCCCTCGCTACTATAAAGAT 1406 ||| |||||||||| | |||||||||||||||| || |||||||| |||||||||||||| Sbjct 2848 GAGCACTACTATAACAACTTGCAAAACTCCCCGGAGATTCTCCCTGGCTACTATAAAGAT 2907 Query 1407 GTCAGTAAGATTACACGGCCTGGACTTGATGGAACGATGCGTTCCTCTACCCTACAGGAT 1466 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2908 GTCAGTAAGATTACACGGCCTGGACTTGATGGAACGATGCGTTCCTCTACCCTACCGGAT 2967 Query 1467 ATGATTGAGGATCTTGATATGCTATCTTCTAGTGATTTTGATACGGTTGAGGTAACCAGT 1526 || || ||||||||||||||||||||| || ||| ||||||| ||||||||||||||||| Sbjct 2968 ATAATCGAGGATCTTGATATGCTATCTCCTGGTGGTTTTGATTCGGTTGAGGTAACCAGT 3027 Query 1527 TTCATCTCCCAAGAATCTCAT-AGTGGGGGTATCCTCGTCGTTGCTGATGGCTACTTCAC 1585 |||| |||||||| |||||| | ||| ||| | ||| | || ||||||||||||||| Sbjct 3028 GTCATGTCCCAAGACTCTCATGACAAGGG-TATTCGCGTTGCTGTTGATGGCTACTTCAC 3086 Query 1586 TTCACAA-GAGAGACCTGCAAGGAACTTCACACAAAACTTCT-TTCTTGCTCCCCAAGAA 1643 || ||| ||||| ||||||||||||||||||||||||||| || |||||||||||||| Sbjct 3087 TTT-CAACGAGAGGCCTGCAAGGAACTTCACACAAAACTTCACTT-TTGCTCCCCAAGAA 3144 Query 1644 AAAGGC-TACTTTGTTTTGTCTGACATGTTCAAGTTTGTTGACATCATCTCCGAGGCTAA 1702 |||||| | |||||||| | ||||||||||||||||||||| ||| | | |||||||||| Sbjct 3145 AAAGGCCT-CTTTGTTTCGACTGACATGTTCAAGTTTGTTGGCAT-A-C-CCGAGGCTAA 3200 Query 1703 TG-ATGCGATAACT---G--AAGG-TGCAGCCATTTGCGTTAAAAAACTTCCTCCTGA-T 1754 || | | || || | || ||| || |||||||||||||| ||||||| | | | Sbjct 3201 TGCAACC-ATTCCTCCTGCTAATAATGCCGCAATTTGCGTTAAAAATCTTCCTC-TAAAT 3258 Query 1755 GCAACCATTACCTTAGTTGAGGATGCATTTAAGCAGTTTGGAGAAATTAGAAGAGGTGGA 1814 ||||||||| |||| |||||| ||||||| ||||||||||||||||| |||||||||||| Sbjct 3259 GCAACCATTGCCTTGGTTGAGAATGCATTCAAGCAGTTTGGAGAAATCAGAAGAGGTGGA 3318 Query 1815 GTTGAAGTTAGGCACAAAAGGAGCTTTTCTTATGGCTTTGTGGAGTTTAAGGAAGAAAGT 1874 ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 3319 GTTGAAGTTAGAAACAAAAGGAGCTTTTCTTATGGCTTCGTGGAGTTTAAGGAAGAAAAT 3378 Query 1875 GCCGCCCAG-GCAGCAATAGAGGCTTCTCCTGTAATGTTTGATTGGCGTAGCGTTTACGT 1933 ||||||||| | ||||||| ||||||||||||||| | |||||| ||||||||||||||| Sbjct 3379 GCCGCCCAGAG-AGCAATAAAGGCTTCTCCTGTAACGATTGATTTGCGTAGCGTTTACGT 3437 Query 1934 GGAGAAGAAGCGACCTGACTATATA-GAT 1961 ||||||||||||||||||||||||| ||| Sbjct 3438 GGAGAAGAAGCGACCTGACTATATACGAT 3466 Score = 555 bits (300), Expect = 9e-157 Identities = 431/492 (88%), Gaps = 18/492 (4%) Strand=Plus/Plus Query 51 GTGGGGGATGAATTTGCAAGGCAATACTATCAGACCTTGCAAAACTCCCCGGAGAATCTC 110 ||||||||||| ||||||||||| |||||| | |||||||||||| |||||||||||||| Sbjct 841 GTGGGGGATGAGTTTGCAAGGCAGTACTATAACACCTTGCAAAACGCCCCGGAGAATCTC 900 Query 111 TATACGTTTTATAAAGATAACAGTACGATTTCACGGCCTGGACTAGATGGAACGATACGT 170 |||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 901 TATAAGCTTTATAAAGATAAGAGTACGATTTCACGGCCTGGACTAGATGGAACGATGCGT 960 Query 171 GTCTTCACTTTATCGGATGTGGATGAGAATGATCTTAAAATG-CAATCTTCTGATGGTTT 229 ||||||||||||||| | | ||| | |||||| || | |||| ||| | |||| Sbjct 961 GTCTTCACTTTATCG-A-----A--AGA-T---CTTAAA-TGGCGATCTCCTGGTAGTTT 1007 Query 230 TGATTCGGTTGTGATAACCAGTGTCACGTCCCAAGATTCTCATGAGCAGGGTTTCCTCGT 289 |||||||||| ||||||||| |||||||||||||| |||| | |||||||| ||||||| Sbjct 1008 TGATTCGGTTAAGATAACCAGCGTCACGTCCCAAGACTCTCTTAAGCAGGGTATCCTCGT 1067 Query 290 GGCTGTTTATGGCTGCTTCACTTTCAACGAGAGACCTGCAAAGCACTTCACACAAAGTGT 349 | ||||||||||| | |||||||||||||||||||||||| ||||||||||||| || | Sbjct 1068 CGTTGTTTATGGCTACCTCACTTTCAACGAGAGACCTGCAAGGCACTTCACACAA-GTTT 1126 Query 350 -CTTTCTTGCTCCCCAAGAAGACGGCTACTTTGTTTTG-ACCGACATATTCAAGTTTGTT 407 |||||||| |||||||||| | |||||| |||||| | |||||||| |||| ||||||| Sbjct 1127 TCTTTCTTGTTCCCCAAGAAAAAGGCTACATTGTTT-GCACCGACATGTTCAGGTTTGTT 1185 Query 408 GATATACCCGAGGTTAATGCAGCCATTCCACCTGCTAATGATGTCACGGAGGAGAAAGTT 467 ||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||| Sbjct 1186 GATATACCCGAGGCCAATGCAGCCATTCCTCCTGCTAATGATGTCATAGAGGAGAAAGTT 1245 Query 468 CCAGAAACGGAGGAAGCTGCACTGAGAGTTTCCGAACCAAGTCAAGGTTTTGAAAATGTT 527 ||||||||||||| |||||| ||||||||||| ||||||| ||| |||||||| |||||| Sbjct 1246 CCAGAAACGGAGGGAGCTGCTCTGAGAGTTTCTGAACCAAATCATGGTTTTGATAATGTT 1305 Query 528 CCCAAGCTATCT 539 |||||||||||| Sbjct 1306 CCCAAGCTATCT 1317 Score = 287 bits (155), Expect = 4e-76 Identities = 179/190 (94%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 1046 GAGAGGAACAGAAGTTTATGACTTGCACAACTGGCAAAAGATTATGGATCAATCGGAGGA 1105 |||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 1998 GAGAGGAACAGATGTTTATGACTTGCAAAACTGGCAAAAGATTATGAATCAATCGGAGGA 2057 Query 1106 GCAGATGAAGTTTCAGGAGGAACAAGGACGACAATACAATCACAACAGATATACAAGCGA 1165 |||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||| Sbjct 2058 GCAGATGAAGTTTCAGGAGGAAGAAGGGCGACAATACAATCAAAACAGATATACAAGCGA 2117 Query 1166 GGAAGTGAGAGGAACAGAAGAATTTGGTCTGga--a-gaagaagaagaagaagagaaCCA 1222 |||||||||||||||||||| | |||||||||| | ||||||||||||||||||||||| Sbjct 2118 GGAAGTGAGAGGAACAGAAGGAGTTGGTCTGGAGGAAGAAGAAGAAGAAGAAGAGAACCA 2177 Query 1223 AAACTGGGAG 1232 |||||||||| Sbjct 2178 AAACTGGGAG 2187 Score = 270 bits (146), Expect = 4e-71 Identities = 425/549 (77%), Gaps = 62/549 (11%) Strand=Plus/Plus Query 1714 CTGAAGGTGCAGCCATTTGCGTTAAAAAACTTCCTCCT-GATGCAACCATTACCTTAGTT 1772 |||| |||||||||||||||| ||||||||||||| || |||||||||||| |||| ||| Sbjct 1325 CTGAGGGTGCAGCCATTTGCGCTAAAAAACTTCCT-CTAGATGCAACCATTGCCTTTGTT 1383 Query 1773 GAGGATGCATTTAAGCAGTTTGGAGAAATTAGAAGAGGTGGAGTTGAAGTTAGGCA-CAA 1831 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 1384 GAGAATGCATTTAAGCAGTTTGGAGAAATTAGAAGAGGTGGAGTTGAAGTTAGA-ATCAA 1442 Query 1832 AAGG-AGCTTTTCT------TATGGCTT-TGTGGAGTTT-AAGGAAGAA-AGTGCCGCC- 1880 || | || | || |||| ||| |||||||||| ||| ||| | || ||||| Sbjct 1443 CTGGCA-CTGTACTGGGAAATATG-CTTATGTGGAGTTTGAAG-AAGCAGAG-GCCGCTA 1498 Query 1881 -CAGGCAGCAATAGA-GGCTTCTCCTGTAATGT-TTGATTGGCGTAGC-GT--TTACGTG 1934 |||| |||||| | ||| |||||| ||| || ||||| || ||| | | ||||||| Sbjct 1499 ACAGG--GCAATA-ATGGCGTCTCCTATAA-GTATTGAT-GG-GTA-CAGAACTTACGTG 1551 Query 1935 GAGAAGAAGCGACCTGACTATATAGATGAAGAATCACTGAGAGTTTATGAACCAGAGGAT 1994 ||||||||| || | || || | || || ||| | | | || | ||| | || | | Sbjct 1552 GAGAAGAAGT-AC--G-CT-TACA-ATAAA-AAT-A-TAAAAGCTGATG--C-AG-G--T 1596 Query 1995 GATGATACTGGAAATGAGAATAATCAAGAGTCTCAAGCGTTATA--TGAGAGTTGTGCAG 2052 | |||||||||||||| ||| | ||| || |||||||| | ||| ||| || || || Sbjct 1597 GCTGATACTGGAAATGGGAACAGTCAGGACTCTCAAGC-T-ATAACTGA-AGATGCACAC 1653 Query 2053 -TTCACGTTAGAA-ACCTTCCTCCAAATGCAACCACTGACTGGGTAGAGAATGCATTTGA 2110 ||| || | || |||||||||||||||||||| || || ||| |||| || |||| | Sbjct 1654 ATTCGTGTAA-AAGACCTTCCTCCAAATGCAACCGTTGCCTTGGTTGAGAGTGTATTTAA 1712 Query 2111 GCAGTTTGGACCAATCAAAAGAGG-AGGAGTTCAAGTTTTTAACCCTGGT--TTGGA-CG 2166 ||||||||||||||| |||| ||| | || ||| |||| | ||||||| | || || | Sbjct 1713 GCAGTTTGGACCAATTAAAA-AGGGACGAATTCGAGTTATAAACCCTGCTAATTCGAACT 1771 Query 2167 ATTGGTTTGGTTTTGTGTG-GTTTGTGCACGCAGATGCTGCCGAGAGCGCAGTAAAGGCA 2225 |||||| || ||||||| | ||||| | | |||||||||||| |||| ||| || |||| Sbjct 1772 ATTGGTATGCTTTTGTG-GAGTTTGAGGAAGCAGATGCTGCCAAGAGAGCAATACAGGCG 1830 Query 2226 TCTCCTCTA 2234 ||||||||| Sbjct 1831 TCTCCTCTA 1839 Score = 261 bits (141), Expect = 2e-68 Identities = 194/219 (89%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 2003 TGGAAATGAGAATAATCAAGAGTCTCAAGCGTTATATGAGAGTTGTGCAGTTCACGTTAG 2062 |||||||||||||||||||||| ||| |||||||||| | |||||||||||||| Sbjct 3549 TGGAAATGAGAATAATCAAGAGCCTCGAGCGTTATAT----G--CTGCAGTTCACGTTAA 3602 Query 2063 AAACCTTCCTCCAAATGCAACCACTGACTGGGTAGAGAATGCATTTGAGCAGTTTGGACC 2122 ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||| Sbjct 3603 AAACCTTCCTCCAAATGTAACCACTGACTGGGTAGAGAACGCATTTAAGCAGTTTGGACC 3662 Query 2123 AATCAAAAGAGGAGGAGTTCAAGTTTTTAACCCTGGTTTGGACGATTGGTTTGGTTTTGT 2182 |||||||||||||||||||||||||| ||||| |||| ||| | ||||||||||| ||| Sbjct 3663 AATCAAAAGAGGAGGAGTTCAAGTTTCTAACCGTGGTGTGGGCAATTGGTTTGGTAATGT 3722 Query 2183 GTGGTTTGTGCACGCAGATGCTGCCGAGAGCGCAGTAAA 2221 | ||||||||| |||| |||||||||||| |||||||| Sbjct 3723 GAAGTTTGTGCATGCAGCTGCTGCCGAGAGAGCAGTAAA 3761 Score = 246 bits (133), Expect = 6e-64 Identities = 328/418 (78%), Gaps = 30/418 (7%) Strand=Plus/Plus Query 616 GAAATGGGAACAGTCAGGAGTCTCGAGCGGTATCTGAGGCATGCATTTA-TC-T-TCATT 672 ||||||||||||||||||| |||| ||| || |||| | ||||| | || | | | Sbjct 1607 GAAATGGGAACAGTCAGGACTCTCAAGCTATAACTGAAG-ATGCACACATTCGTGTAAAA 1665 Query 673 G-GCTTCCTACAAAAACAACCGTTGCCTTGGTTGAGAATGCATTTAAGCAGTTTGGAAAA 731 | |||||| |||| ||||||||||||||||||||| || |||||||||||||||| | Sbjct 1666 GACCTTCCTCCAAATGCAACCGTTGCCTTGGTTGAGAGTGTATTTAAGCAGTTTGGACCA 1725 Query 732 ATT-AGAAGAGGTGGAGTT-GAACTTA-GAA----GCAAAAAGAGATA-TAAAGGGAAAT 783 ||| | ||| || || || | | ||| || || || || | | | || | Sbjct 1726 ATTAAAAAG-GGACGAATTCG-AGTTATAAACCCTGC-TAATTCGA-ACT-ATTGG---T 1777 Query 784 ATGCTTATGTGGAGTTTGAGGAAGCAGAGGCCGCCAACAGGGCAATA-ATGGCGTCTCCT 842 |||||| ||||||||||||||||||||| || ||||| || |||||| | |||||||||| Sbjct 1778 ATGCTTTTGTGGAGTTTGAGGAAGCAGATGCTGCCAAGAGAGCAATACA-GGCGTCTCCT 1836 Query 843 CTAAGTATTTTTGGGTACAGAA-TTACCGTGCAGAAGAATCGATCTTACCT-TAAAGGTT 900 |||| | || ||| ||| || ||| |||| || |||| | | | || || | |||||| Sbjct 1837 CTAAATGTTGATGGCCACACAACTTA-CGTGGAGCAGAAGCAACCATA-CTATGAAGGTT 1894 Query 901 ACTGTGAAATTCCATCCGCTGGACCAGGAAACATACACAGAGGCGAGGGAGTGAGAGGAT 960 ||| ||||| |||||||| |||||||||||||||| | |||||||||||||||||||||| Sbjct 1895 ACTATGAAAGTCCATCCGATGGACCAGGAAACATAAAGAGAGGCGAGGGAGTGAGAGGAT 1954 Query 961 CACTAGGTAACCCCTTTTATAACTGGCAGAAGATGATGGAGGAAGTGAGAGAAACAGA 1018 |||||||||| ||| ||| |||||||||||||||| | |||||||||||| |||||| Sbjct 1955 CACTAGGTAATCCCATTTGTAACTGGCAGAAGATG--G-AGGAAGTGAGAGGAACAGA 2009 Score = 104 bits (56), Expect = 4e-21 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 1240 CGGAGGAACAGGGGAAGATTCAGGAGGAAGAAGGGCGACAATACAATCAGAACAGATATA 1299 ||||||| ||| |||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 2051 CGGAGGAGCAGATGAAGTTTCAGGAGGAAGAAGGGCGACAATACAATCAAAACAGATATA 2110 Query 1300 CAAGGGAGCAAATGAAAGAAACAGGAGGA 1328 |||| ||| || ||| || ||||| |||| Sbjct 2111 CAAGCGAGGAAGTGAGAGGAACAGAAGGA 2139 Score = 87.9 bits (47), Expect = 4e-16 Identities = 85/103 (83%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 780 AAATATGCTTATGTGGAGTTTGAGGAAGCAGAGGCCGCCAACAGGGCAATAATGGCGTCT 839 |||| ||||| |||||| || ||| ||||||| | ||||||||||||||||||||||||| Sbjct 2350 AAATTTGCTTTTGTGGACTTCGAGAAAGCAGATGTCGCCAACAGGGCAATAATGGCGTCT 2409 Query 840 CCTCTAAGTATTTTTGGGTACAGAA--TTACCGTGCAGAAGAA 880 ||| | || |||| || | | | || ||| |||||||||||| Sbjct 2410 CCTGTGAGGATTTGTGAGAA-A-AACGTTAACGTGCAGAAGAA 2450 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 115009448595 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5