BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928402
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07280.1 | Symbols: | pseudogene of unknown protein | chr3:... 130 5e-30
> AT3G07280.1 | Symbols: | pseudogene of unknown protein | chr3:2318922-2321215
REVERSE LENGTH=2294
Length=2294
Score = 130 bits (70), Expect = 5e-30
Identities = 179/224 (80%), Gaps = 38/224 (17%)
Strand=Plus/Minus
Query 3 TTGGAGTTCATA-AAGATATATGAGC--AGCTC-AAAGCACCTTTTTATCGGAAGCCGCC 58
|||||||| | | ||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 517 TTGGAGTT-AAATAAGATATATGAGCAGAGCTCAAAAGCACCTTTATATCGGAAGCCGCC 459
Query 59 AACAAGTTGGCCTCTTTCCGATTGAATC--AA--CAG--A-T-ACAA--------CACTT 102
||||||||||||||||||||||||||| || | | | | | || |||||
Sbjct 458 AACAAGTTGGCCTCTTTCCGATTGAATGTGAATTCCGCCAATCAAAAAAAGATAACACTT 399
Query 103 -ATTCCAATTTTCAATCCA---ACAGACTCTTTTGACCGCAATTA--T-C-A-----GGG 149
||||||||| |||||| ||||||||||||||||||||||| | | | |||
Sbjct 398 TATTCCAATT--CAATCCTCCCACAGACTCTTTTGACCGCAATTAGGTTCTAAATCAGGG 341
Query 150 ACACGATCCAATCAAACCCTaaaaaaaaaa--CAATCGCAAACC 191
||||||||||||||||||||||||||||| ||||||||||||
Sbjct 340 CCACGATCCAATCAAACCCTAAAAAAAAAAAACAATCGCAAACC 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8450626968
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5