BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg928402 Length=191 Score E Sequences producing significant alignments: (Bits) Value AT3G07280.1 | Symbols: | pseudogene of unknown protein | chr3:... 130 5e-30 > AT3G07280.1 | Symbols: | pseudogene of unknown protein | chr3:2318922-2321215 REVERSE LENGTH=2294 Length=2294 Score = 130 bits (70), Expect = 5e-30 Identities = 179/224 (80%), Gaps = 38/224 (17%) Strand=Plus/Minus Query 3 TTGGAGTTCATA-AAGATATATGAGC--AGCTC-AAAGCACCTTTTTATCGGAAGCCGCC 58 |||||||| | | ||||||||||||| ||||| ||||||||||| |||||||||||||| Sbjct 517 TTGGAGTT-AAATAAGATATATGAGCAGAGCTCAAAAGCACCTTTATATCGGAAGCCGCC 459 Query 59 AACAAGTTGGCCTCTTTCCGATTGAATC--AA--CAG--A-T-ACAA--------CACTT 102 ||||||||||||||||||||||||||| || | | | | | || ||||| Sbjct 458 AACAAGTTGGCCTCTTTCCGATTGAATGTGAATTCCGCCAATCAAAAAAAGATAACACTT 399 Query 103 -ATTCCAATTTTCAATCCA---ACAGACTCTTTTGACCGCAATTA--T-C-A-----GGG 149 ||||||||| |||||| ||||||||||||||||||||||| | | | ||| Sbjct 398 TATTCCAATT--CAATCCTCCCACAGACTCTTTTGACCGCAATTAGGTTCTAAATCAGGG 341 Query 150 ACACGATCCAATCAAACCCTaaaaaaaaaa--CAATCGCAAACC 191 ||||||||||||||||||||||||||||| |||||||||||| Sbjct 340 CCACGATCCAATCAAACCCTAAAAAAAAAAAACAATCGCAAACC 297 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8450626968 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5