BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928411
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07360.1 | Symbols: PUB9, ATPUB9 | plant U-box 9 | chr3:2354... 1083 0.0
> AT3G07360.1 | Symbols: PUB9, ATPUB9 | plant U-box 9 | chr3:2354721-2356854
FORWARD LENGTH=1787
Length=1787
Score = 1083 bits (586), Expect = 0.0
Identities = 639/665 (96%), Gaps = 1/665 (0%)
Strand=Plus/Plus
Query 310 CAGCAACAAGAAGCTCGTCTGCG-AAATCCTTGTGTGATTCCTCTACTTATCGATGCATT 368
||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||
Sbjct 904 CAGCAACAAGAAGCTCGTCTGCGAAAATCCTAATGTGATTCCTCTCCTTATCGATGCATT 963
Query 369 GAGGCGTGGAACGGTAGCCACGAGAAGCAATGCAGCTGCGGCGATCTTTACTCTGTCGGC 428
|||||||||||| || ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 964 GAGGCGTGGAACAGTCGCCACGAGAAGCAATGCAGCTGCAGCGATCTTCACTCTGTCAGC 1023
Query 429 ACTCGATTCGAACAAAGTACTTATAGGGAAGTCCGGAATCCTGAAACCGCTTATTGATCT 488
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1024 TCTCGATTCAAACAAAGTACTTATAGGGAAGTCCGGAATCCTGAAACCGCTTATCGATCT 1083
Query 489 CCTAGAAGAAGGGAATCCGTTAGCTATCAAAGACGTAGCTGCAGCGATCTTCACTCTTTG 548
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 CCTAGAAGAAGGGAATCCATTAGCTATCAAAGACGTAGCTGCAGCGATCTTCACTCTTTG 1143
Query 549 TATAGCTCATGAAAACAGGAGTAGAGCTGTGAGAGACGGAGCTGTTAGGGTTTTAGGTAA 608
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 TATAGCCCATGAGAACAGGAGTAGAGCTGTGAGAGACGGAGCTGTTAGGGTTTTAGGTAA 1203
Query 609 GAAAATCTCAAATGGGTTGTACGTCGATGAGCTTTTAGCTATATTAGCAATGCTTGTTAC 668
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1204 GAAAATCTCGAATGGGTTGTACGTTGATGAGCTTTTAGCTATATTGGCAATGCTTGTTAC 1263
Query 669 TCACTGGAAGGCTGTGGAGGAATTGGGTGAGCTCGGTGGGGTTTCTTGGTTGCTGAAGAT 728
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1264 TCACTGGAAGGCTGTGGAGGAATTGGGTGAGCTCGGTGGGGTTTCATGGTTGCTGAAGAT 1323
Query 729 AACTCGAGAGAGCGAGTGCAAGCGAAACAAAGAGAATGCGATAGTGATACTGCATACTAT 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 AACTCGAGAGAGCGAGTGCAAGCGAAACAAAGAGAATGCGATAGTGATACTGCATACTAT 1383
Query 789 ATGTTTCAGCGACAGGACAAAGTGGAAGGAGATCAAAGAAGAGGAGAATGCTCATGGAAC 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 ATGTTTCAGCGACAGGACAAAGTGGAAGGAGATCAAAGAAGAGGAGAATGCTCATGGAAC 1443
Query 849 GATAACAAAGCTTTCGCGTGAAGGAACTTCAAGGGCACAGAGGAAAGCAAATGGGATCTT 908
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 1444 GATAACAAAGCTTTCGCGTGAAGGAACTTCAAGGGCGCAGAGGAAAGCAAACGGGATATT 1503
Query 909 GGACAGACTGAGAAAAGCTATGAATCTCACTCATACAGCCTGAGAGAAGCCTTGGATTCC 968
||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 1504 GGACAGACTGAGAAAAGCTATGAATCTCACTCATACAGCCTGAGAAAAGCCTTGAAATCT 1563
Query 969 GCAAT 973
|||||
Sbjct 1564 GCAAT 1568
Score = 472 bits (255), Expect = 4e-132
Identities = 295/314 (94%), Gaps = 3/314 (1%)
Strand=Plus/Plus
Query 1 CCGGC-GGTGGATCCGACGGCGATGGCGAAGACCGGTGTTTTCGATTCGGATCCGACGGC 59
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CCGGCGGGTGGAACCGACGGCGATGGCGAAGACCGGTGTTTTCGATTCGGATCCGACGGC 201
Query 60 GATTGCGAAAGCCAAAGAACTGAAGCGTGAGATGAAGAAGCTGCTGATTAAGATCGAAGA 119
|||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 202 GATTGCTAAAGCCAAGGAACTGAAGCGTGAGATGAAGAAGTTGCTGATTAAGATCGATGA 261
Query 120 TGAAGATGACTTTGGG-GTTCAGACAATTGATCAGTTACAAGAGGCTTTGTCTGCGTTGA 178
|||||||| |||||| |||||||| |||||||||||||| || ||||||||||||||||
Sbjct 262 CGAAGATGA-TTTGGGTGTTCAGACGATTGATCAGTTACAGGACGCTTTGTCTGCGTTGA 320
Query 179 GAGAAGCGACGATGAGGAAGATGGCGAAATCGTCTTCACTGGAGATGCTCGAGACTGTGT 238
||||||||||||||||||||||||||||||| || || | |||||||||||||||||||
Sbjct 321 GAGAAGCGACGATGAGGAAGATGGCGAAATCTTCCTCGTTAGAGATGCTCGAGACTGTGT 380
Query 239 CTTGTCCTGAGGAGTTTCGTTGTCCTCTCTCTAATGAGCTTATGAGGGATCCTGTTGTTT 298
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 381 CTTGTCCTGAGGAGTTTCGTTGTCCTCTCTCTAATGAGCTTATGAGGGATCCCGTCGTTT 440
Query 299 TGGCTTCTGGTCAG 312
||||||||||||||
Sbjct 441 TGGCTTCTGGTCAG 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47621971356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5