BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928417
Length=695
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07410.1 | Symbols: AtRABA5b, RABA5b | RAB GTPase homolog A5... 1107 0.0
> AT3G07410.1 | Symbols: AtRABA5b, RABA5b | RAB GTPase homolog
A5B | chr3:2372317-2373556 REVERSE LENGTH=896
Length=896
Score = 1107 bits (599), Expect = 0.0
Identities = 664/696 (95%), Gaps = 2/696 (0%)
Strand=Plus/Plus
Query 1 TCTCGAAGAAG-ACGAAGAAGATGGGTAAGGAAGACGACCGAGGAGAAGAGTACCTGTTC 59
||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 55 TCTCGAAGAAGTA-GAAGAAGATGGGTAAGGAAGATGACCGAGGAGAAGAGTACCTGTTC 113
Query 60 AAGATTGTCCTGATCGGCGATTCGGCTGTCGGAAAATCGAACCTGCTGTCTCGCTTTTCT 119
||||||||||| ||||||||||| |||||||||||||||||| |||||||||| |||||
Sbjct 114 AAGATTGTCCTAATCGGCGATTCCGCTGTCGGAAAATCGAACTTGCTGTCTCGATTTTCG 173
Query 120 CGGGACGAGTTCGACACGAACTCGAAGGCGACAATCGGAGTGGAATTTCAGACGCAGCTG 179
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 174 CGGGATGAGTTCGACACGAACTCAAAAGCGACAATCGGAGTGGAATTTCAGACGCAGCTG 233
Query 180 GTGGAAATCGAAGGGAAAGAAGTGAAAGCTCAGATCTGGGACACTGCTGGTCAAGAGAGG 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GTTGAAATCGAAGGGAAAGAAGTGAAAGCTCAGATCTGGGACACTGCTGGTCAAGAGAGG 293
Query 240 TTTAGAGCAGTCACTTCTGCTTATTACAGAGGTGCTTTTGGTGCTCTCATCGTTTATGAC 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TTTAGAGCTGTCACTTCTGCTTATTACAGAGGTGCTTTTGGTGCTCTCATCGTTTATGAC 353
Query 300 ATCACCCGAAGTGACACTTTCGAAAGCGTCAAACGATGGCTCCAGGAACTCAACACTCAT 359
||||| ||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 354 ATCACTCGAGGTGACACTTTCGAAAGCGTTAAACGTTGGCTCCAGGAACTCAACACTCAT 413
Query 360 TGTGACACTGCGGTGGCACAAATGCTAGTTGGAAACAAATGCGATTTGGAGGATATCAGA 419
|||||||| || |||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 414 TGTGACACGGCAGTGGCACAAATGCTAGTTGGGAATAAATGCGATTTGGAGGATATAAGA 473
Query 420 GCGGTCAGTGTGGAGGAAGGGAAAGCTCTTGCGGAGGAAGAAGGATTGTTCTTCATGGAG 479
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 474 GCGGTGAGTGTGGAGGAAGGGAAAGCTCTTGCGGAGGAAGAAGGATTGTTCTTTATGGAA 533
Query 480 ACATCCGCTCTGGACGCCACAAATGTAGACAAAGCCTTTGAGATTGTCATCAGAGAGATC 539
||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 534 ACATCGGCTCTGGACGCCACAAATGTAGACAAAGCCTTTGAGATCGTTATCAGAGAGATC 593
Query 540 TTCAACAATGTCAGCCGCAAACTTCTCAACTCTGATGCTTACAAGGCCGAGCTTTCCGTT 599
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 594 TTCAACAATGTCAGCCGCAAACTTCTCAACTCTGATGCTTACAAAGCAGAGCTTTCCGTT 653
Query 600 AACCGGGTCAGCCTTGTCAACAACCAAGATGGCTCCGAGAGCTCTTGGCGGAATCCGTCT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 AACCGGGTCAGCCTTGTCAACAACCAAGATGGCTCCGAGAGCTCTTGGCGGAATCCGTCT 713
Query 660 TGCTGCTCCCGATGATTTAAATCAATCTTGTTTTTA 695
|| ||||||||||||||| |||||||||||||||||
Sbjct 714 TGTTGCTCCCGATGATTTCAATCAATCTTGTTTTTA 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33656878490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5