BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928419

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G07425.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   490    4e-138


> AT3G07425.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:2378350-2378805 
FORWARD LENGTH=456
Length=456

 Score =  490 bits (265),  Expect = 4e-138
 Identities = 301/318 (95%), Gaps = 3/318 (1%)
 Strand=Plus/Plus

Query  21   ATGGTAAGAAGAAGCACAGTTCATGCCATTTCAAGTCTTCCGTCGAGGTACTGGTGGCCG  80
            ||||||||||||| | ||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct  1    ATGGTAAGAAGAAACGCAGTTCATGCCATGTCAAGTCTTCCGTCAAGGTCCTGGTGGCCG  60

Query  81   CAGCAACGAAGGAAAGGAAAACGAGTCGTCGTGCGGTTAGGTAACCGGCGACGAGGGTTC  140
            || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  61   CAACAACGAAGGAAAGGAAAACGAGTCGTCGTGCGGTTAGGAAACCGGCGACGAGGGTT-  119

Query  141  TTT-GTGGGGCCACCGCGGATGGTGGTGCAGAGATGGAGGATGAACATCGGAAAGCCGAT  199
            ||| ||||||||||||||||||||  |||||||||||||||||||||| |||||||||||
Sbjct  120  TTTGGTGGGGCCACCGCGGATGGTTATGCAGAGATGGAGGATGAACATGGGAAAGCCGAT  179

Query  200  GAAGATGATGAGAAGTATCATTTTGGGGATACTCTCAAATGGTGGAAATGTTAAGTTCTT  259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  GAAGATGATGAGAAGTATCATTTTGGGGATACTCTCAAATGGTGGAAATGTTAAGTTCTT  239

Query  260  AGATGCTTATCTTTGGTCTTTACCAATCTTACGTCCTCAGTTGTTTCCACTATGTTGATT  319
            ||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct  240  AGATGCTTACCTTTGGTCTTTACCAATCTTACGTCCTCACTTGTTTCCACTGTGTTGATT  299

Query  320  TGTTGTGATACCAATTTC  337
            | |||| |||||||||||
Sbjct  300  T-TTGTAATACCAATTTC  316



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15733805437


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5