BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928421
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07440.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1173 0.0
AT5G48530.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 656 0.0
> AT3G07440.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G48530.1);
Has 37 Blast hits to 37 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:2381337-2383207
FORWARD LENGTH=1008
Length=1008
Score = 1173 bits (635), Expect = 0.0
Identities = 707/742 (95%), Gaps = 3/742 (0%)
Strand=Plus/Plus
Query 5 CCGCCGGGAACCCGCCATGAACTTTGTCGTCAGACGGGTAGGCTCCATTTTGCCGTCGAT 64
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CCGCCGGAAAACCGCCATGAACTTTGTCGTCAGACGGGTAGGCTCCATTTTGCCGTCGAT 118
Query 65 ACGTCACGGC-GCAGTTTCCCAAATCCGGCTAGCCAGAACAGAGACAGGTCAGCCGAGAC 123
|||||||||| || |||||||| || || || || ||||||||| |||||||||||||||
Sbjct 119 ACGTCACGGCGGC-GTTTCCCAGATTCGACTCGCGAGAACAGAGGCAGGTCAGCCGAGAC 177
Query 124 GGCGAAACAAGTTGCCTTCTCTTCCGCTCAAGAAGAAGGAAGAGAAATCCGAGTGGTGGA 183
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 178 GGCGAAACAAGTTGCCTTCTCTTCCGCTAAAGAAGAAGGAAGAGAAATCCGAGTGGTGGA 237
Query 184 TAGTCGACGGAGAGATGCACGAGATCGGCGATCACGTCCCTCCTCGTGAGCGGTTCACAA 243
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 238 TAGTAGACGGAGAGATGCACGAGATCGGTGATCACGTCCCTCCTCGTGAGCGTTTCACAA 297
Query 244 TCCCCAGGGACAACATTCCAAACAAACGCCGGAAGCAGCTCCGTGAGCAGTTCATGCGCC 303
||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct 298 TCCCCAGGGACAACATTCCGAACAAACGCCGTAAGCAGCTCCGTGACCAGTTCATGCGCC 357
Query 304 GCACTCGTCTCGTCCTGAAAGAATCGGAACATGAGCCATGGTGCAAAAAGTATATGGAAC 363
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GCACTCGCCTCGTCCTTAAAGAATCGGAACATGAGCCATGGTGCAAAAAGTATATGGAAC 417
Query 364 TATATAACGAGCTTAGAGAGAACTGGGAGAGGCTTTATTGGGATGAAGGATATTCAAAGA 423
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 418 TATATAACGAGCTTAGAGAAAACTGGGAGAGGCTTTATTGGGATGAAGGGTATTCAAAGA 477
Query 424 AAATCGCAAGTGATCATGCAAATTATGAATCTGCTGAAGAAGACGATGAAGATTTTAATC 483
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 478 AACTCGCAAGTGATCATGCAAATTATGAATCCGCTGAAGAAGACGATGAAGATTTTAATC 537
Query 484 CATACAGGAACAGGCGGTCTTACAGCGATCAAACAAAGGAGCAAGGGTTTAATAGAACTA 543
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 538 CATACAGGAACAGGCGGTCTTTCAGCGATCAAACAAAGGAGCAAGGGTTTAATAGAACTA 597
Query 544 CACAAGGTGATAATTGGGAGAAAGTCAATCAAATCAGGGATAAGTTTGAGTATGATAGAG 603
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 598 CACAAGGTGATAATTGGGAGAAAGTCAGTCAAATCAGGGATAAGTTTGAGTATGATAGAG 657
Query 604 AAAGGAGGATGAGAGATAAAGCCTTTGCACCAATGAATGCAGCACCAGCCTCTCAAGAAT 663
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 658 AAAGGAGGATGAGAGATAAAGCCTTTGCACCAATGAATGCAGCACCAGAATCTCAAGAAT 717
Query 664 CTAGGGACTTAAATTGGAATGCACAAAGACGGCCTTTTGATGCTGAGAGATTCACAAGGG 723
|||||||||| ||||||||||||||||||||||| |||||| |||| |||||| ||||||
Sbjct 718 CTAGGGACTTGAATTGGAATGCACAAAGACGGCCATTTGATCCTGATAGATTCGCAAGGG 777
Query 724 ATTGAATACG-TAAACATCACA 744
||||||||| | |||||||||
Sbjct 778 ATTGAATACCCTTAACATCACA 799
> AT5G48530.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G07440.1); Has 32 Blast
hits to 32 proteins in 11 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr5:19666837-19668830
REVERSE LENGTH=1203
Length=1203
Score = 656 bits (355), Expect = 0.0
Identities = 553/646 (86%), Gaps = 24/646 (4%)
Strand=Plus/Plus
Query 99 AGAACAGAGACAGGTCAGCCGAGACGGCGAAACAAGTTGCCTTCTCT-T--CCGCTCAAG 155
||||| ||| || ||||||| |||||||| ||||| || || ||||| | || ||||||
Sbjct 125 AGAACGGAGGCAAGTCAGCCAAGACGGCGGAACAAATTTCCCTCTCTATCGCCACTCAAG 184
Query 156 AAGAAGGAAGAGAAATCCGAGTGGTGGATAGTCGACGGAGAGATGCACGAGATCGGCGAT 215
||||| || |||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 185 AAGAAAGAGGAGAAATCAGAGTGGTGGATCGTCGACGGAGAGATGCACGAGATCGGAGAT 244
Query 216 CACGTCCCTCCT-CGTGAGCGGTTCACAATCCCCAGGGACAACATTCCAAACAAACGCCG 274
||||| ||| || |||||||| ||||||||||| || ||||| || || || || |||||
Sbjct 245 CACGTACCT-CTGCGTGAGCGTTTCACAATCCCGAGAGACAATATCCCCAATAAGCGCCG 303
Query 275 GAAGCAGCTCCGTGAGCAGTTCATGCGCCGCACTCGTCTCGTCCTGAAAGAATCGGAACA 334
||| ||||||||||||||||||||||| || ||||||||||| || ||||||||||| ||
Sbjct 304 GAAACAGCTCCGTGAGCAGTTCATGCGACGAACTCGTCTCGTTCTTAAAGAATCGGAGCA 363
Query 335 TGAGCCATGGTGCAAAAAGTATATGGAACTATATAACGAGCTTAGAGAGAACTGGGAGAG 394
||||||||||||||| ||||| |||||| | ||||| ||| ||||||| |||||||||||
Sbjct 364 TGAGCCATGGTGCAAGAAGTACATGGAATTGTATAATGAGGTTAGAGAAAACTGGGAGAG 423
Query 395 GCTTTATTGGGATGAAGGATATTCAAAGAAAATCGCAAGTGATCATGCAAATTATGAATC 454
|||||||||||||||||||||||| |||||||| || || |||||||| |||||||| ||
Sbjct 424 GCTTTATTGGGATGAAGGATATTCTAAGAAAATTGCGAGAGATCATGCTAATTATGAGTC 483
Query 455 TGCTGAAGAAGACGATGAAGATTTTAATCCATACAGGAACAGGCGGTC-TTACAGCGAT- 512
|||||||||||| |||||||||||||||||||||||||| ||||| || ||| | |||
Sbjct 484 TGCTGAAGAAGATGATGAAGATTTTAATCCATACAGGAATAGGCG-TCCTTATAATGATT 542
Query 513 CAA-ACAA--AGGAGCAAGGGTTTAATAGAACTACACAAGGTGATAAT---TGGGAGAAA 566
||| | || ||||||| |||||||||||||| |||||||||||| || |||||||||
Sbjct 543 CAATA-AAGCAGGAGCAGGGGTTTAATAGAACAACACAAGGTGATGATAACTGGGAGAAA 601
Query 567 GTCAATCAAATCAGGGATAAGTTTGAGTATGA-TAGAGAAAGGAGGATGAGAGATAAAGC 625
|| | ||||||| |||| || ||||||||||| | |||||||||| |||||||| |||||
Sbjct 602 GTGAGTCAAATCCGGGACAAATTTGAGTATGACT-GAGAAAGGAGAATGAGAGAAAAAGC 660
Query 626 CTTTGCACCAATGAATGCAGCACCAGCCTCTCAAGAATCTAGGGACTTAAATTGGAATGC 685
||||||||||||||| || ||| || || | || ||||| ||||| |||||||||||
Sbjct 661 CTTTGCACCAATGAACGCCGCAGCA-CC----A-GACTCTAGAGACTTGAATTGGAATGC 714
Query 686 ACAAAGACGGCCTTTTGATGCTGAGAGATTCACAAGGG-ATTGAAT 730
||| |||| ||| |||||||||||||||| ||| ||| |||||||
Sbjct 715 ACAGAGACAGCCATTTGATGCTGAGAGATACACTCGGGGATTGAAT 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36319288281
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5