BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928423

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G07450.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   544    3e-154


> AT3G07450.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr3:2383610-2383930 
REVERSE LENGTH=321
Length=321

 Score =  544 bits (294),  Expect = 3e-154
 Identities = 312/321 (97%), Gaps = 0/321 (0%)
 Strand=Plus/Plus

Query  25   ATGATTTTAATGAAAAAGATTCAGGTTTTTACAGTGATGTTACTTATAGTTATGGTCCAG  84
            |||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGATTGTAATGAAAAAGAGTCAGGTTTTTACAGTGATGTTACTTATGGTTATGGTCCAG  60

Query  85   TCAGGTCTGGTGAGAGAGACGCTGGGACACCCATGTGGTCGTACATTTTTGTCGGCTTTG  144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TCAGGTCTGGTGAGAGAGACGCTGGGACACCCATGTGGTCGTACATTTTTGTCGGCTTTG  120

Query  145  ATTCAGCTAGTGCCGTGTAGACCATCAGTGGCTCCGTTTAGCACATTGCCTCCGAACAAG  204
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct  121  ATTCAGCTAGTGCCGTGTAGACCATCAGTGGCTCCGTTTAGCACATTGCCTCCGAACGGG  180

Query  205  CTATGTTGCGCTGCTATCAAGATACTTGGTCAACCTTGTCTATGCGTTCTTGCCAAGGGA  264
            |||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct  181  CTATGTTGCGCTGCCATCAAGACACTTGGTCAACCTTGTTTATGCGTTCTTGCCAAGGGA  240

Query  265  CCACCCATCGTTGGCGTTGACCGGACCCTCGCTCTCCATTTACCTGGAAAATGTTCTGCC  324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CCACCCATCGTTGGCGTTGACCGGACCCTCGCTCTCCATTTACCTGGAAAATGTTCTGCC  300

Query  325  AATTTTCCTCCATGTAATTAA  345
            ||||||| |||||||||||||
Sbjct  301  AATTTTCTTCCATGTAATTAA  321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17141302409


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5