BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928428

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G07490.1 | Symbols: AGD11 | ARF-GAP domain 11 | chr3:2391189...   782    0.0  


> AT3G07490.1 | Symbols: AGD11 | ARF-GAP domain 11 | chr3:2391189-2391650 
FORWARD LENGTH=462
Length=462

 Score =  782 bits (423),  Expect = 0.0
 Identities = 449/462 (97%), Gaps = 0/462 (0%)
 Strand=Plus/Plus

Query  21   ATGGATCAAGCTGAGCTTGCCCGGATATTCCAAATGTTCGACAGGAACGGGGACGGCAAA  80
            ||||||||||| ||||||||| |||| ||||||||||||||||||||||| || ||||||
Sbjct  1    ATGGATCAAGCGGAGCTTGCCAGGATCTTCCAAATGTTCGACAGGAACGGTGATGGCAAA  60

Query  81   ATCACGAAGCAAGAGCTGAATGATTCATTGGAGAATCTAGGAATCTACATTCCAGACAAA  140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATCACGAAGCAAGAGCTGAATGATTCATTGGAGAATCTAGGAATCTACATTCCAGACAAA  120

Query  141  GACTTGGTGCAGATGATCGAGAAGATTGATCTCAACGGTGATGGCTACGTAGACATCGAA  200
            |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  121  GACTTGGTGCAGATGATCGAGAAGATTGATCTCAACGGTGATGGGTACGTGGACATCGAA  180

Query  201  GAGTTTGGAGGGTTGTACCAGACGATTATGGAGGAAAGAGACGAGGAGGAAGACATGAGA  260
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  181  GAGTTTGGAGGGTTGTACCAGACGATAATGGAGGAAAGAGACGAGGAGGAAGACATGAGA  240

Query  261  GAGGCTTTCAACGTGTTTGATCAGAACCGGGACGGGTTCATCACGGTGGAAGAGCTAAGA  320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  241  GAGGCTTTCAACGTGTTTGATCAGAACCGGGACGGGTTCATCACGGTGGAAGAGCTAAGG  300

Query  321  TCTGTGTTAGCGTCCTTGGGGCTCAAGCAAGGAAGAACCCTAGAGGATTGCAAGAGGATG  380
            ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  301  TCTGTGTTAGCTTCCTTGGGGCTCAAACAAGGAAGAACCCTAGAGGATTGCAAGAGGATG  360

Query  381  ATAAGCAAAGTCGACGTTGATGGAGATGGCATGGTGAATTTCAAGGAGTTTAAACAAATG  440
            ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  361  ATAAGCAAAGTTGACGTTGATGGAGATGGCATGGTGAATTTCAAAGAGTTTAAACAAATG  420

Query  441  ATGAAAGGTGGTGGATTTGCCGCCTTAGGATCAAACTTGTAA  482
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  ATGAAAGGTGGTGGATTTGCCGCCTTAGGATCAAACTTGTAA  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23961688119


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5