BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928429
Length=713
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07500.1 | Symbols: | Far-red impaired responsive (FAR1) fa... 942 0.0
> AT3G07500.1 | Symbols: | Far-red impaired responsive (FAR1)
family protein | chr3:2392287-2393778 FORWARD LENGTH=823
Length=823
Score = 942 bits (510), Expect = 0.0
Identities = 601/644 (93%), Gaps = 10/644 (2%)
Strand=Plus/Plus
Query 47 TGGAAGGGAACTCTTTACCCGAAGAAGATGTAGAGATGATGGAGAATTCAGATGGAATGA 106
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 102 TGGAAGGGAACTCTTTACCCGAAGAAGATGTAGAGATGATGGAGAATTCAGATGTAATGA 161
Query 107 AGACAGT------TGAATCTTTTCCAATGGTGGAGCCATTCATTGGTATGAAGTTTGAAT 160
||||||| |||| ||| ||||||||||||||| |||||||||||| |||||||||
Sbjct 162 AGACAGTCACAGATGAAGCTTCTCCAATGGTGGAGCCGTTCATTGGTATGGAGTTTGAAT 221
Query 161 CAGAAGAGGCTGCAAAGTCTTTCTATGACAATTACGCCATATGCATGGGTTTCGTTATGC 220
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 222 CAGAAGAGGCTGCAAAGTCTTTCTATGACAATTACGCTACATGCATGGGTTTCGTTATGC 281
Query 221 GAGTGGATGCTTTCAGGAGGTCGATGCGAGATGGGACTGTGGTGTGGCGCCGACTGGTGT 280
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||
Sbjct 282 GAGTGGATGCTTTCAGGAGGTCAATGCGAGATGGGACTGTGGTGTGGCGCAGACTCGTGT 341
Query 281 GTAATAAAGAAGGATTCCGTAGATCTAGACCTCGGAGAAGTGAGAGCAGGAAA-CCTCGG 339
|||||||||||||||| ||||| || |||||||||||||| ||||| | |||| ||||||
Sbjct 342 GTAATAAAGAAGGATTTCGTAGGTCGAGACCTCGGAGAAGCGAGAGTA-GAAAGCCTCGG 400
Query 340 GCTATAACAAGAGAAGGGTGTAAAGCTCTGATTGTGGTGAAAAGAGAGAAATCCGGAAAC 399
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 401 GCTATAACAAGAGAAGGGTGTAAAGCTCTGATTGTTGTGAAAAGAGAGAAATCCGG-AAC 459
Query 400 -TGGGTTGTCACTAAATTTGAGAAAGAACATAATCATCCTCTCTTGCCTCTCTCGCCTAA 458
||| |||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 460 ATGGCTTGTTACTAAATTTGAGAAAGAGCATAATCATCCTCTCTTGCCTCTCTCCCCTAA 519
Query 459 TGTTCGCCGGAATCCTCCGCTCCCTCAAACACCGGACGAGAAAGACGCAAAGATTCGGGA 518
||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 520 TGTTCGCCGGAATTTTCAGCTCCCTCAAACACCGGACGAGAAAGACGCAAAGATTAGGGA 579
Query 519 GCTGAGTGCAGAGCTGAGCCGAGAGAGAAGGCGTTGTACTGCTTTGCAACAGCAGCTTGA 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 GCTGAGTGCAGAGCTGAGCCGAGAGAGAAGGCGTTGTACTGCTTTGCAACAGCAGCTTGA 639
Query 579 TATGGTCCTCAAGGAGATGGAAGAACATTCCAACCATCTCTCCACTAACATCAATAATGT 638
||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 640 TATGGTCCTTAAGGAGATGGAAGAACATTCCAACCATCTCACCATTAACATCAATAGTGT 699
Query 639 TATCCAAAGTGTTAGAGAAATCGAGTCAAATATTTTCACTAAAC 682
|||||||||||||||||| || ||||| |||| |||||| ||||
Sbjct 700 TATCCAAAGTGTTAGAGACATTGAGTCCAATACTTTCACCAAAC 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34561093136
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5