BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928432
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07525.2 | Symbols: ATG10, ATATG10 | autophagocytosis-associ... 1107 0.0
> AT3G07525.2 | Symbols: ATG10, ATATG10 | autophagocytosis-associated
family protein | chr3:2399143-2400402 REVERSE LENGTH=837
Length=837
Score = 1107 bits (599), Expect = 0.0
Identities = 681/721 (94%), Gaps = 3/721 (0%)
Strand=Plus/Plus
Query 1 CGACTTTGTTTGCTCCTCCGATGGATTCAGCTCGAGAGGTCAGCGATGGTAGACTCACCG 60
||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3 CGATTTTGTTTACTCCTCCAATGGATTCAGCTCGAGAGGTCAGCGATGGTAGACTCACCG 62
Query 61 TTGAGGGTTTCTCTGTAGCTGCTCGAACTTTTGCCGATAAGTGGAAGATACATAACCAAT 120
| || ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 63 TCGAAGGTTTCTCTGTAGCTTCTCGAGCTTTTGCCGATAAGTGGAAGATACATAACCAAT 122
Query 121 CGTTCCCTCCATGGTCTTGGGTTCCTCTGATCAATCGAACTCTACTTGTCTCAAAGAAGC 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 123 CGTTCCCTCCATGGTCTTGGGTTCCTCTGATCAATCGAACTCTACTTGTTTCAAAGAAGC 182
Query 181 AGGAGGAAGGTTACTTGTCGCTGGAGAAGATCATCATTCTCAGTTCACTTGAGGA--AA- 237
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 183 AGGAGGAAGGTTACTTGTCGCTGGAGAAGATCATAATTCTCAGTTCACTTGAGGAGGAAA 242
Query 238 TTCCGGAGGATGAATCTCTAAATGTCGCAACTGATTGCTCGGAAAAAGAAGAATCAATTG 297
|||| |||||||||||||||||||| || |||||||||| ||||||||||||| || |||
Sbjct 243 TTCCAGAGGATGAATCTCTAAATGTAGCTACTGATTGCTTGGAAAAAGAAGAAACAGTTG 302
Query 298 ATCACACGATCTTGGTCCCAACCCTGGAAAATGAAGCACACTACTATGATTTCCATATAG 357
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 303 ATCACACGATTTTGGTCCCAACCATGGAAAATGAAGCACACTACTATGATTTCCATATAG 362
Query 358 TTTACAGTGCTTCATACAAGGTTCCTGTGCTATATTTTCGCGGATACTGCAGCGGTGGAC 417
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TTTACAGTGCATCATACAAGGTTCCTGTGCTATATTTTCGCGGATACTGCAGCGGTGGAG 422
Query 418 AACCCCTTGCTTTGGATGTCATaaaaaaaGATCTGCCCTCATGCTCTCTTAGTCTTTTGC 477
|||| ||||||||||||||||||||||||||| | |||||||||||| ||||||||||||
Sbjct 423 AACCTCTTGCTTTGGATGTCATAAAAAAAGATGTACCCTCATGCTCTGTTAGTCTTTTGC 482
Query 478 TGGAATCTAAGTGGACATTTATAACTCAGGAGGAGCACCCATATTTAAACAGGCCATGGT 537
|||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 483 TGGAATCTAAGTGGACTTTTATAACTCAAGAGGAGCATCCATATTTGAACAGGCCATGGT 542
Query 538 TCAAGCTACATCCCTGTGGGACTGAGGAATGGATCAAGCTGCTTTCTCAAAGTAGCAGCT 597
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 543 TCAAGCTACATCCCTGTGGGACTGAGGACTGGATCAAGCTGCTTTCCCAAAGTAGCAGCT 602
Query 598 CTTCTGGATGTCATATGCCAGTTGAGTTGTACTTGGTCTCATGGTTCTCTGTTGTCGGGC 657
||||||||||||| |||||| ||| |||||||||||| ||||||||||||||||||||||
Sbjct 603 CTTCTGGATGTCAGATGCCAATTGTGTTGTACTTGGTTTCATGGTTCTCTGTTGTCGGGC 662
Query 658 AGGTGGTTGGTCTTAGGACCCCTCTTCAGATGCTGAATTAGGAACCATCTTCTGTTATCA 717
|||||||||||||||||| ||||||| |||||||||||||| | ||||||||||||||||
Sbjct 663 AGGTGGTTGGTCTTAGGATCCCTCTTGAGATGCTGAATTAGTAGCCATCTTCTGTTATCA 722
Query 718 A 718
|
Sbjct 723 A 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34812263871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5