BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928433
Length=2141
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07530.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Beta-Casp... 3347 0.0
> AT3G07530.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Beta-Casp
domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein
match is: cleavage and polyadenylation specificity factor
73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits
to 615 proteins in 160 species: Archae - 54; Bacteria - 6;
Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes
- 94 (source: NCBI BLink). | chr3:2400793-2404280
FORWARD LENGTH=2100
Length=2100
Score = 3347 bits (1812), Expect = 0.0
Identities = 2006/2102 (95%), Gaps = 4/2102 (0%)
Strand=Plus/Plus
Query 21 ATGAAATTGACATGTCTGAGCAAAGGAGATGGCTTTCATTATCCGCCTTGTCATATGTTG 80
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1 ATGGAATTGACATGTCTGAGCAAAGGAGATGGCTTTCACTATCCGCCTTGTCATATGCTG 60
Query 81 AA-CATATGTGGTTTCAGGATATTGATTGACTGCCCTTTGGACCTTTCGGCAATCAAAAT 139
|| | |||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 61 AATC-TATGTGGTTTCAGGATTTTAATTGACTGCCCTTTGGACCTTTCGGCAATCAAAAT 119
Query 140 CTTCTCACCTGTTATATCTTGTG-TGGCTTCTGAAGCTTCTAAATATCCATCTGATGAGT 198
|||||| |||||| |||| ||| ||| ||||||||||||| |||||| |||||||||||
Sbjct 120 CTTCTCTCCTGTTCCATCTGGTGTTGG-TTCTGAAGCTTCTGAATATCTATCTGATGAGT 178
Query 199 CGTTGGATGCTCAGAATCCAATTCAAAAGAAGCATAAACTGGAGAGACAGCTAACTTTTG 258
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 179 CGTTGGATGCTCAGAATCCAATTCAAAAGAAGCAAAAACTGGAGAGACAGCTAACTTGTG 238
Query 259 CTGATTTGGTGTGTGAAGAACCGTGGTACAAAACTGTGAAACCCTTGCATTTGTGGGATG 318
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 239 CTGATTTGGTGTGTGAAGAACCGTGGTACAAAACTGTGAAAGCCTTGCATTTGTGGGAGG 298
Query 319 CTTCTTTCATTGATATTGTTCTCATCTCCAACCCTATGGGATTGCTCGGATTGCCATTCC 378
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 CTTCTTTCATTGATATTGTTCTCATCTCTAACCCTATGGGATTGCTCGGATTGCCATTCC 358
Query 379 TTACCCAAAACCCTGGATTTTCTGCCAAGATATATATGACTGAAGCAACAGCTAAGATTG 438
|||| |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||
Sbjct 359 TTACTCAAAACCCTGGATTTTTTGCCAAGATATATATGACTGAAGTAACAGCGAAGATTG 418
Query 439 GACAGCTCATGATGGAAGATCTTGTCTCGATGCACGCGGAATTCAGATGTTTTCATGGAC 498
|||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||
Sbjct 419 GACAGCTCATGATGGAAGATATTGTCTCGATGCACAAGGAATTCAGATGCTTTCATGGAC 478
Query 499 CTGACAACTCCAGTTTCCCTGGGTGGATAAAGAATTTAGATCGTGAACAAGTACCAGCCT 558
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 479 CTGACAACTCCAGTTTTCCTGGGTGGATAAAGAATTTAGATAGTGAACAAGTACCAGCCT 538
Query 559 TGCTTAAAAAAGTTGTCTTCGGCGAGAGTGGTGATGATCTGGGCAGTTGGATGCGTCTGT 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGCTTAAAAAAGTTGTCTTCGGCGAGAGTGGTGATGATCTGGGCAGTTGGATGCGTCTGT 598
Query 619 ACAGTTTAGATGATATAGAGAGTTGCATGAAGAAGGTTCAAGCCGTAAAGTTTGCAGAAG 678
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 599 ACAGTTTAGATGATATAGAGAGTTGCATGAAGAAGGTTCAAGGCGTAAAGTTTGCAGAAG 658
Query 679 AAGTATGTTATAATGGGACCTTAAACATTAAGGCTCTAAGTTCAGGTCTAGATATTGGGG 738
|||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 659 AAGTTTGTTACAATGGGACCTTAATCATTAAGGCTCTAAGTTCAGGTCTAGATATTGGGG 718
Query 739 CTTGCAATTGGTTGATCAGCGGACCTAATGGAAGTCTAAGTTATGTCTCAGACTCCATCT 798
|||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 719 CTTGTAATTGGTTGATCAACGGACCTAATGGAAGTCTAAGTTATGTGTCAGACTCCATCT 778
Query 799 TCGTTTCACATCATGCAAGAAATTTTGATTTCCATGGTCTCAAAGGAACCGATGTGTTGA 858
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 779 TCGTTTCACATCATGCAAGAAGTTTTGATTTCCATGGTCTCAAAGAAACCGATGTTTTGA 838
Query 859 TTTACTCAGATTTCTCATCCCTCCAATCTGCAGAAGTGACTGAGAATGGTTGTATTTCTC 918
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 839 TTTACTCAGATTTCTCATCCCTCCAATCTGCAGAAGTGACTGAGGATGGTTGTATTTCTC 898
Query 919 CTGACCCAGATAATAATTATATATCAACAACCAGTGACAACAAGGATTCATTACTAAACA 978
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 899 CTGACTCAGATAATAATTATATATCAACAATCAGTGACAACAAGGATTCATTACTAAACA 958
Query 979 CTGAAGACAGCTTAGAAGAGATGGAGAAACTAGAGTTTATTTGTTCATGTGCTGCAGAAT 1038
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 959 CTGAAGACAGCTTAGAAGAGATGGAGAAACTAGCGTTTGTTTGTTCATGTGCTGCAGAAT 1018
Query 1039 CTGCTGATGCTGGTGGCTCAACCTTGATAACGATTACGAGAATCGGTATAGTTCTGCAGC 1098
||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 1019 CTGCTGATGCTGGTGGCTCAACCTTGATAACGATTACTAGAATTGGGATAGTTCTGCAGC 1078
Query 1099 TCCTAGAGCTAATGTCAAATTCTCTTGAATCCTCGTCTCTAAAGGTTCCAATTTTTGTAA 1158
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1079 TCCTAGAGCTATTGTCAAATTCTCTTGAATCCTCGTCTCTAAAGGTTCCAATCTTTGTAA 1138
Query 1159 TATCTTCTGTGGCAGAAGAGTTATTGGCATACACAAACACCATACCCGAGTGGCTGTGCG 1218
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1139 TATCTTCTGTGGCAGAAGAGCTATTGGCATACACAAACACCATACCCGAATGGCTGTGCG 1198
Query 1219 AGCAACAACAGGAGAAGTTAATTTCAGGAGAACCATCATTTGGCCATCTTAAATTCATTA 1278
| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1199 AACAACGACAGGAGAAGTTAATTTCAGGAGAACCATCGTTTGGCCATCTTAAATTCATCA 1258
Query 1279 AAGACAAGAAGATCCATTTGTTTCCTGCCATTCATTCACCCAACTTAATTTATGCGAACA 1338
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AAAACAAGAAGATCCATTTGTTTCCTGCCATTCATTCACCCAACTTAATTTATGCGAACA 1318
Query 1339 GAACGAGTTGGCAGGAACCATGCATCATATTTGCTCCTCACTGGAGTTTGCGACTTGGCC 1398
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1319 GAACGAGTTGGCAGGAACCATGCATCGTATTTGCTTCTCACTGGAGTTTGCGACTTGGCC 1378
Query 1399 CTTCTGTCCAACTTCTTCAGCGTTGGCGTGGAGATCCAAAATCATTGCTTGTTCTTGAGG 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CTTCTGTCCAACTTCTTCAGCGTTGGCGTGGAGATCCAAAATCATTGCTTGTTCTTGAGG 1438
Query 1459 ATGGGATTAGTTCAGGTTTAGGACTTCTCCCTTTTAGACCGATAGCAATGAAAATTCTCC 1518
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1439 ATGGGATTAGTTCAGGTTTAGGACTTCTCCCTTTTAGACCGATAGCGATGAAAATTCTCC 1498
Query 1519 AATGTTCATTTCTTTCTGGAATAAGGTTGCAAAAGCTCCCAACACTTCTTTCCGTTTTGC 1578
||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 1499 AATGTTCATTTCTTTCTGGAATAAGGTTGCAGAAGCTCCCAACACTTGTATCCGTTTTGC 1558
Query 1579 AGCCAAAGATTGTCTTGGTCCCTGATGCTGTCAATCAGAGGATCAATTTTGCTGCAATGA 1638
||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| || |
Sbjct 1559 AGCCAAAGATTTTCTTGGTCCCTGATGCTGTCAATCAGAGGATCAGTTTGGCTGCGATAA 1618
Query 1639 AGACAATATCAATCCTGAATTACTTTGAAAACAAGACGCTACGTGTACCAAGAATTGCAG 1698
|||| || |||||||||||||||||||| ||||||||||||| |||||||||||||| ||
Sbjct 1619 AGACCATCTCAATCCTGAATTACTTTGAGAACAAGACGCTACATGTACCAAGAATTGTAG 1678
Query 1699 ACAATCCAAGCGTAGAGATTACGACAGACTTGGCCTCCAAATTGAGCTGGAGAAAACTGA 1758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 ACAATCCAAGCGTAGAGATTACGACAGACTTGGCCTCCAAATTGAGCTGGAGAAAACTGA 1738
Query 1759 GACAACGTGAAAACTTTGGTATTGCAAGATTGAAAGGTGGGCTTCTGATGGAAGATGGGA 1818
| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 GGCAACGTGAAAGCTTCGGTATTGCAAGATTGAAAGGTGGGCTTCTGATGGAAGATGGGA 1798
Query 1819 AACACAGATTAGTTTCAGGGTTGGAGCAGGAAGAAAGTTCAGGAAAGGCTCGGCCATTGA 1878
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 AACACAGATTAGTTTCCGGGTTGGAGCAGGAAGAAAGTTCAGGAAAGGCTCGGCCATTGA 1858
Query 1879 GGCATTGGGGCTCAGTGGCTCCGGAATCACTTTTAGACGCTTTACTGAAAATCAGAATAA 1938
||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||
Sbjct 1859 GGCATTGGGGCTCAGTGGCTCCGGAATTACTTTTAGACGCATTACTGAAAATGGGAATAA 1918
Query 1939 AAGGATCCTTAGAACAGAGCATAGGTGAGACTGGATCAGACGACAACAGTATAATCCATA 1998
|||||||| | |||||||| | |||||| | ||||||||| ||||| |||||||||||||
Sbjct 1919 AAGGATCCATCGAACAGAGTACAGGTGATAATGGATCAGAAGACAAGAGTATAATCCATA 1978
Query 1999 TAGCAAATCCTAGCAGTGGCCTGATAGAGGTCTCAGAGATGGGTACTGCTATTATAACAG 2058
||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1979 TAGAAAATCCTAACAGTGGCCTGATAGAGTTCTCAGAGATGGGTACTGCTATTATAACAG 2038
Query 2059 ACGATGAGAATGTAGCCTCTCAGGTCTTCCAGGCGATTGATGGAATTCTTGACGGTATTT 2118
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 2039 GCGATGAGAATGTAGTCTCTCAGGTCTTCCAGGCGATTGATGGAGTTCTTGACGGTATAT 2098
Query 2119 AG 2120
||
Sbjct 2099 AG 2100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106174152675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5