BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928434

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G06610.1 | Symbols:  | DNA-binding enhancer protein-related ...   320    3e-87


> AT3G06610.1 | Symbols:  | DNA-binding enhancer protein-related 
| chr3:2060737-2062067 FORWARD LENGTH=670
Length=670

 Score =  320 bits (173),  Expect = 3e-87
 Identities = 194/204 (95%), Gaps = 2/204 (1%)
 Strand=Plus/Plus

Query  1    AGAAGAGAAG-AGTTAGAAGCAATGGAGGGAGCAGAGGAAGCTGGGGCTGAGATAGCGGT  59
            |||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  80   AGAAGAGAAGAAATT-GAAGCAATGGAGGGAGCAGAGGAAGCTGGGGCTGAGATAGCGGT  138

Query  60   AGATTCAAAGGACTTGCAGCAACATAGCAAAGCTTTCGACAAGCTCACCGATCGTGTCGA  119
             ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  139  TGATTCAAAGGACTTGCAGCAACAAAGCAAAGCTTTCGACAAGCTCACCGATCGTGTCGA  198

Query  120  GGATCGCCAGCTCGATTCCTCTCGTGTTCAATCGGCTATGGCTACAATTGCTGCTTCTAG  179
            ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct  199  GGATCGCCAGCTCGATTCCTCTCGTGTTCAATCGGCTATGGCTTCGATTGCTGCTTCTAG  258

Query  180  GAAGGTTGATCTAAATGCTAAGAG  203
            | ||| |||||| |||||||||||
Sbjct  259  GGAGGCTGATCTGAATGCTAAGAG  282



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10606495039


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5