BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928436
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07550.1 | Symbols: | RNI-like superfamily protein | chr3:2... 1930 0.0
> AT3G07550.1 | Symbols: | RNI-like superfamily protein | chr3:2409477-2411294
FORWARD LENGTH=1708
Length=1708
Score = 1930 bits (1045), Expect = 0.0
Identities = 1161/1217 (95%), Gaps = 7/1217 (1%)
Strand=Plus/Plus
Query 5 GAAGTTGAAGTGAGGCATGGAAGATGTGTCCGAGTCTG---ATAATGTTGAGACCTCCAT 61
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 345 GAA-TTGAAGTGAGGCATGGAAGATGTGTCCGAGTCTGATAATAATGTTGAGACCTCCAT 403
Query 62 TATCCACCTTCCAGATGATTGCCTTTCCTTTATCTTCCAACGACTTGATAATGTTGCTGA 121
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 404 TATCCACCTTCCAGATGATTGCCTTTCCTTTATCTTTCAACGACTTGATAGTGTTGCTGA 463
Query 122 CCATGATTCATTTGGTTTGACTTGTCATCGCTGGCTCAACATCCAAAACATTAGCCGTCG 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 CCATGATTCATTTGGTTTGACTTGTCATCGCTGGCTCAACATCCAAAACATTAGCCGTCG 523
Query 182 ATCTTTACAGTTCCAGTGTTCTTTCACTGTCCTGAACCCTGCTAGTCTGTCTCAGACAAA 241
|||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct 524 CTCTTTACAGTTCCAGTGTTCTTTCTCTGTCCTGAACCCTTCAAGTCTGTCTCAGACAAA 583
Query 242 TCCTGATGTCAATTCCT-ATCATCTCCACAGGCTTCTTACTCGGTTTCAGTGGTTGGAGC 300
||||||||| | | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 TCCTGATGTGAGCT-CTCATCATCTCCACAGGCTTCTTACTCGGTTTCAGTGGTTGGAGC 642
Query 301 ATCTTTCCCTTTCTGGCTGCACGGTGCTGAATGATTCGAGTCTCGCCTCGCTCAGCTATC 360
||||||| |||||||||||||| |||||||||||||||||||||| ||| ||||| ||||
Sbjct 643 ATCTTTCGCTTTCTGGCTGCACTGTGCTGAATGATTCGAGTCTCGACTCCCTCAGGTATC 702
Query 361 CTGGTGCAAGACTGCATAGTCTTTACTTAGATTGTTGCTTTGGGATTTCTGATGATGGGA 420
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 703 CCGGTGCAAGACTGCATACTCTTTACTTAGATTGTTGCTTTGGGATTTCTGATGATGGGA 762
Query 421 TCTCCACAATTGCTAGCTTTTGTCCCAATCTCAGAGTTGTCAGTCTCTACCGCTGCAACA 480
||||||| ||||||||||||||||||||||| || || || ||||| ||||||||||| |
Sbjct 763 TCTCCACTATTGCTAGCTTTTGTCCCAATCTAAGTGTGGTTAGTCTTTACCGCTGCAATA 822
Query 481 TCAGTGACATTGGATTGGAGACATTGGCCACGGCTTCCTTGTCTCTAAAATGCGTGAATC 540
||||||||||||| || || || ||||||| |||||||||||||||||||||||||||||
Sbjct 823 TCAGTGACATTGGGTTAGAAACGTTGGCCAGGGCTTCCTTGTCTCTAAAATGCGTGAATC 882
Query 541 TCTCGTACTGCCCTCTGGTATCTGATTTAGGGATAAAAGCATTGTCACAAGCATGCTTGC 600
||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 883 TCTCGTACTGCCCGCTGGTATCTGATTTTGGGATAAAAGCGTTGTCACAAGCATGCTTGC 942
Query 601 AGCTTGAGTCAGTGAAAGTCTCAAACTGCAAGAGCATTACTGGTGTTGGCTTTAATGGCT 660
||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||
Sbjct 943 AGCTTGAGTCAGTGAAAATCTCAAACTGCAAGAGCATTACCGGTGTTGGCTTTAGTGGCT 1002
Query 661 GTTCTCCAACTCTAGGCTATGTGGATGCAGAGTCTTGTCAGCTTGAGCCGAAGGGTATAA 720
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1003 GTTCTCCAACTCTAGGCTATGTGGATGCTGACTCTTGTCAGCTTGAGCCGAAGGGTATAA 1062
Query 721 CGGGGATCATTAGCGGAGGTGGGATTGAGTTTCTAAATATTTCAGGTGGAAGTTGCTACA 780
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1063 CGGGGATCATTAGCGGAGGTGGGATTGAGTTTCTAAACATTTCAGGTGTAAGTTGCTACA 1122
Query 781 TCCGCAAAGATGGGTTGGTACCTATTGGATCCGGGATTGCATCAAAACTTAGAATCTTGA 840
| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1123 TTCGCAAAGATGGGTTGGTACCTATTGGATCTGGAATTGCATCAAAACTTAGAATCTTGA 1182
Query 841 ACCTAAGGATGTGCAGAACGGTTGGTGATGAATCCATTGAAGCTATAGCAAAAGGTTGTC 900
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 ACCTTAGGATGTGCAGAACGGTTGGTGATGAATCCATTGAAGCTATAGCAAAAGGTTGTC 1242
Query 901 CATTGCTCCAAGAGTGGAACTTGGCTCTGTGTCATGAAGTTAAGGTTTCGGGATGGAAAG 960
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||
Sbjct 1243 CATTGCTCCAAGAGTGGAACTTGGCTCTTTGTCATGAAGTTAAGATTTCGGGATGGGAAG 1302
Query 961 CCGTAGGAAAGTGGTGCCGTAACTTGAAGAAACTCCATGTGAACCGTTGTAGGAACTTAT 1020
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 CCGTAGGGAAGTGGTGCCGTAACTTGAAGAAACTCCATGTGAACCGTTGTAGGAACTTAT 1362
Query 1021 GTGACCAAGGGTTGCTTGCTCTACGATGCGGTTGCATGAACCTCCAGATTCTCTACATGA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 GTGACCAAGGGTTGCTTGCTCTACGATGCGGTTGCATGAACCTCCAGATTCTCTACATGA 1422
Query 1081 ACGGGAACGTGAGGCTGACCCCTACAGCAATTGAGATGTTCAGATTACATAGAGCCGATA 1140
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 ACGGGAACGCGAGGCTGACCCCTACAGCAATTGAGATGTTCAGATTACATAGAGCCGATA 1482
Query 1141 TAACACTAAGGACAGAAGAAATGATGGTCATAGGACCAGACTGGAGACTATATGCACAAG 1200
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 TAACACTAAGAACAGAAGAAATGATGGTCATAGGACCAGACTGGAGACTATATGCACAAG 1542
Query 1201 AATGAA-GCATCAATTT 1216
||| || ||||||||||
Sbjct 1543 AATAAAAGCATCAATTT 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60190453455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5