BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928455

Length=761
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G07710.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   592    2e-168


> AT3G07710.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: DNA-binding storekeeper protein-related transcriptional 
regulator (TAIR:AT2G25650.1); Has 38 Blast hits to 38 proteins 
in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr3:2464336-2464773 REVERSE LENGTH=438
Length=438

 Score =  592 bits (320),  Expect = 2e-168
 Identities = 395/431 (92%), Gaps = 5/431 (1%)
 Strand=Plus/Plus

Query  333  GAGATTGGGACTGGTGGGAAGGAGAGTGAGGTAGTTGAAGCAGTGACAAACGGTGAACCT  392
            |||| || ||||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct  4    GAGAATGAGACTGGTGGGAAGGATAGGGAGGTAGTTGAAGCAGTGACAAACAGTGAACCT  63

Query  393  GGGAATCATGATGGATCTGCaaaaaaaGGCGACTCTTGTGACGACAAATTACCTTCTGAA  452
            || |||  |||||||| |||||||||||||||||||| ||| ||||||||||||||||||
Sbjct  64   GGAAATGGTGATGGATTTGCAAAAAAAGGCGACTCTTATGATGACAAATTACCTTCTGAA  123

Query  453  AACGTTGACAAACATATGGAGAATGAGGATAATGGGAAGGAG-AGTGAGGAAGATGATGC  511
            || ||||||||||||||||||||||||| ||||| ||||||| || |||||||||| |||
Sbjct  124  AATGTTGACAAACATATGGAGAATGAGGCTAATGAGAAGGAGAAG-GAGGAAGATGGTGC  182

Query  512  TGCTGATGAGCTGTGCGCGTTACAGGACGCGCTTGAGAGGACACTGTTTCAACATTTAGG  571
            |||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||| |
Sbjct  183  TGCTGATGAGCTGTGCGCTTTACAGGATGCGCTTGAGACGACACTGTTTCAGCATTTAAG  242

Query  572  TAAGTATGCACAGAAGCAGGTGCTT-GAGAAGTTGAGGAGCCTTAGAGCCAAGGAAAGGA  630
             || ||||||||||||||| || ||  |||||||||||||||||||||||||||||||||
Sbjct  243  CAACTATGCACAGAAGCAGATG-TTACAGAAGTTGAGGAGCCTTAGAGCCAAGGAAAGGA  301

Query  631  AAGAGTTGAGCGGTGAATGGAAGTCATTACTTGCTCAGGAGGCGCTACTGAAGAGCAAGA  690
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  302  AAGAGTTGAGCGGTGAATGGAAGTCATTACTTGCTCAGGAGGCGCTACTGAAGAGCAAGA  361

Query  691  AACATTCGTTTTCCGCCAAACTCGCAAATGCAACATTTCATAATTAGGTAGAAGAAACTA  750
            || |||||||||| ||| |||||||||||||||||||||||| || || |||||||||||
Sbjct  362  AATATTCGTTTTCAGCCGAACTCGCAAATGCAACATTTCATACTTGGGAAGAAGAAACTA  421

Query  751  GAGGGAATGGT  761
            || | ||||||
Sbjct  422  GACG-AATGGT  431



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36972332192


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5