BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928456
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07720.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1578 0.0
> AT3G07720.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:2465365-2467233 FORWARD LENGTH=1264
Length=1264
Score = 1578 bits (854), Expect = 0.0
Identities = 981/1043 (94%), Gaps = 5/1043 (0%)
Strand=Plus/Plus
Query 3 GTAA-TTGCAGCAGAGCAACGATGGCAGCGACTCCAATGGAAGGCAAATGGATTCAGCTT 61
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 54 GTAATTTGCAGCAGAGCAACGATGGCAGCGACTCCAATGGAAGGCAAATGGGTTCAGCTT 113
Query 62 AAACAGAAAGGAACCGGACCAGGAGCAAGAAGCTCTCATGCCATAGCTCTTGTGGGAAAC 121
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 114 AAACAGAAAGGAACCGGACCAGGAGCAAGAAGCTCTCATGCTATAGCTCTTGTGGGAAAC 173
Query 122 AAAATGTATGCCTTTGGCGGTGAGTTCCAACCGCGTGTTCCCGTTGACAACAATCTCTAC 181
||||||||||||||||| || ||||| ||||| |||||||| ||||||||| | ||||||
Sbjct 174 AAAATGTATGCCTTTGGTGGCGAGTTTCAACCACGTGTTCCTGTTGACAACCAGCTCTAC 233
Query 182 GTTTTCGACCTCGAGACTGAGACATGGTCGATCCAGGAAGCTTCTGGGGATGCTCCTCCT 241
|||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 234 GTTTTCGACCTCGAAACTCAGACATGGTCTATCCAGGAAGCTTCTGGGGATGCTCCTCCT 293
Query 242 CCTAGAGTAGGTGTAGCCATGGCTGCAGTCGGACCCATCATCTATTTCTTTGGTGGCCGG 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CCTAGAGTAGGTGTAGCCATGGCTGCAGTCGGACCCATCATCTATTTCTTTGGTGGCCGG 353
Query 302 GATTCGACTCACCAGGAGCTCAACGAGCTCTACTGTTTCAACACGTCGACCAACCAGTGG 361
|| |||||||||||||||||||||||| | |||||||| ||||| | |||||||||||||
Sbjct 354 GACTCGACTCACCAGGAGCTCAACGAGTTATACTGTTTTAACACTTTGACCAACCAGTGG 413
Query 362 AAACTACTCTCTTCAGGGGAAACCGGTCCACAAAACCGAAGCTACCACTCGATCACTGCG 421
|||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 414 AAACTACTCTCTTCAGGGGAAACCGGTCCACAGAACCGAAGCTACCACTCTATTACTGCG 473
Query 422 GATTCTCAGAACGTGTATGTGTTTGGTGGATGCGGAGTTGAAGGGCGTCTTAACGACCTA 481
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 474 GATTCTCAGAACGTGTATGTGTTTGGTGGATGCGGAGTTGATGGGCGTCTCAACGATCTA 533
Query 482 TGGGCTTACAATGTTGTTGATCAGAAATGGATTAAGTTCCCGTCTCCGGGAGAAGCCTGT 541
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 534 TGGGCTTACAATGTCGTTGATCAGAAATGGATTAAGTTCCCATCTCCGGGAGAAGCTTGT 593
Query 542 AGAGGAAGAGGTGGTCCAGGGCTAGAGGTGGTTCAAGGAAAGATCTGGGTGGTATATGGA 601
||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 594 AGAGGAAGAGGCGGTCCAGGACTCGAGGTGGTTCAAGGAAAGATCTGGGTGGTATATGGA 653
Query 602 TTCGCAGGAGAAGGAGCGGATGATGTTCAC-GTTTTTGACATAGCTACAGGAGAATGGAA 660
||||||||||||| ||| || ||||| ||| |||| |||||||||| ||| ||||||||
Sbjct 654 TTCGCAGGAGAAGAAGCAGACGATGTCCACTGTTTC-GACATAGCTAAAGGGGAATGGAA 712
Query 661 TGAAGTTGAGACAAAAGGCGAAAAACCGTCAGCAAGAAGTGTGTTTTCAACTGCAGTTGT 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 713 AGAAGTTGAGACAAAAGGCGAAAAACCGTCAGCAAGAAGTGTGTTTTCGACTGCGGTTGT 772
Query 721 TGGGAAACAGATACTGATATCTGGAGGGGAAATCGATCCTAGCGATTTGGGGCATATGGG 780
||||||||||||||||||||||||||| || || || || |||||| |||||||||||||
Sbjct 773 TGGGAAACAGATACTGATATCTGGAGGAGAGATTGACCCGAGCGATCTGGGGCATATGGG 832
Query 781 AGCAGGATGTTTCACAGGTGACGCGTATGGGCTTGATACAGAGACGTTGGAATGGAGGAA 840
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 833 AGCAGGATGTTTCACAGGTGACGCTTATGGGCTTGATACAGAGACGCTGGAATGGAGGAA 892
Query 841 ATGGGAGGATGGGGTTGGATCAGAGGAGCATCCGGGGCCTAGAGGATGGTGCGCGTTTGC 900
||||||||||||||||||||| | ||||||||| || |||||||||||||||||||||||
Sbjct 893 ATGGGAGGATGGGGTTGGATCGGTGGAGCATCCCGGTCCTAGAGGATGGTGCGCGTTTGC 952
Query 901 GGCTGGATCACGAGATGGTAAGCAAGGTTTGTTGGTTTACGGCGGGAACTCACCGAGCAA 960
||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||
Sbjct 953 AGCTGGATCACGAGATGGTAAGCAAGGTCTGTTGGTTTATGGCGGGAACTCGCCGAGCAA 1012
Query 961 TGATAGGCTTGATGATATCTTCTTCTTCACTCCCAGCACT--ACTCAAGTGATTGGTAAC 1018
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1013 TGATAGGCTTGATGATATCTTCTTCTTCACTCCCAACACTCTACTCAAGTGATTGGTAAC 1072
Query 1019 TAAGTATGGTTTGGTTTTCTTGC 1041
|||||||||||||||||||||||
Sbjct 1073 TAAGTATGGTTTGGTTTTCTTGC 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51188595793
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5