BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928460

Length=467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G07760.1 | Symbols:  | Sterile alpha motif (SAM) domain-cont...   734    0.0  


> AT3G07760.1 | Symbols:  | Sterile alpha motif (SAM) domain-containing 
protein | chr3:2476394-2478254 FORWARD LENGTH=876
Length=876

 Score =  734 bits (397),  Expect = 0.0
 Identities = 407/412 (99%), Gaps = 0/412 (0%)
 Strand=Plus/Plus

Query  56   AGAGGAAAGGATGAACAGAGAACATCCTCCTGAGCCTCTTGATTTCTTCATCTGGACTGT  115
            |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  182  AGAGGAAAGGATGACCAGAGAACATCCTCCCGAGCCTCTTGATTTCTTCATCTGGACTGT  241

Query  116  TGAGGATGTTGGGTCTTGGCTCGAGGAGATAAACCTTGGGGGCTACCGCCAGATTTTCAA  175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  242  TGAGGATGTTGGGTCTTGGCTCGAGGAGATAAACCTTGGGGGCTACCGCCAGATTTTCAA  301

Query  176  AGAAAATGGTGTCAATGGAGAATATCTAGAAAGCATGTCTGTGTTTACAACCGAGCAGAT  235
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  302  AGAAAATGGTGTCAATGGAGAATATCTAGAAAGCATGTCTGTGTTTACTACCGAGCAGAT  361

Query  236  CCTTCACTTCATAAGGAGGCATCACATGAAGTGGGGAGACTTCATTACCCTCTGTAAAGA  295
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  362  CCTTCACTTCATAAGGAGGCATCACATGAAGTGGGGAGACTTCATCACCCTCTGTAAAGA  421

Query  296  ACTCAGAAGGATTAAAGTGGCTTGCTTGAAAGGTGAGCAGAGAGTTAGACGGCCATGGTG  355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  422  ACTCAGAAGGATTAAAGTGGCTTGCTTGAAAGGTGAGCAGAGAGTTAGACGGCCATGGTG  481

Query  356  GGCACCGTCTTGTCTATCCGTAGTCTTTGTTAAGGCAGCCAAACGCAACCGACAGTCTCG  415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  482  GGCACCGTCTTGTCTATCCGTAGTCTTTGTTAAGGCAGCCAAACGCAACCGACAGTCTCG  541

Query  416  TGTTGTATCTCTCAAGCTTGAGTCTTGACATTACACTTTGGCTGTTTATGTA  467
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  542  TGTTGTATCTCTCAAGCTTGAATCTTGACATTACACTTTGGCTGTTTATGTA  593



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22203492974


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5