BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928472
Length=766
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07880.1 | Symbols: SCN1 | Immunoglobulin E-set superfamily ... 1188 0.0
> AT3G07880.1 | Symbols: SCN1 | Immunoglobulin E-set superfamily
protein | chr3:2513971-2515823 FORWARD LENGTH=1206
Length=1206
Score = 1188 bits (643), Expect = 0.0
Identities = 728/767 (95%), Gaps = 13/767 (2%)
Strand=Plus/Plus
Query 1 AGGGCGAGCGAGGCTGATTGATGTCTTTGGTATCTGGAACCAGGGACATGGGGTTCGACG 60
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 186 AGGGCGAGAGA-GCTGATTGATGTCTTTGGTATCTGGAGCCAGGGACATGGGGTTCGACG 244
Query 61 acaacaacaacaac---aacaacaaGGACGGGGATGATGAAAACTCCTCCTCCAGAACCA 117
|||||||||||||| ||||||||||| || |||||||| |||||||||||||||| |
Sbjct 245 ACAACAACAACAACAAGAACAACAAGGATGGAGATGATGAGAACTCCTCCTCCAGAA-C- 302
Query 118 GAACCAGAACCGACGACGATGCTC-TCGCTAGACAGATGAGCGAATCTTCTCTTTGTGCT 176
| ||| ||||||||||||||| | | | |||||||||||||||||||||||||||||
Sbjct 303 --A--AGAGCCGACGACGATGCTCTTAG-TCGACAGATGAGCGAATCTTCTCTTTGTGCT 357
Query 177 ACCGAGGAAGAAGAAGACGACGATTCCAAATTGCAATTGGGTCCTCAGTACACTATCAAA 236
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACCGAGGAGGAAGAAGACGACGATTCCAAATTGCAATTGGGTCCTCAGTACACTATCAAA 417
Query 237 GAACATCTCGAGAAGGACAAGGATGATGAGAGTCTGAGGAAATGGAAGGAACAGCTTCTG 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GAACATCTCGAGAAGGACAAGGATGATGAGAGTCTGAGGAAATGGAAGGAACAGCTTCTC 477
Query 297 GGAAGTGTTGATGTCACCAACATTGGAGAGACTCTTGATCCGGAAGTGAGGATTCTTAGC 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 478 GGAAGTGTTGATGTCACCAACATTGGAGAGACTCTTGATCCGGAAGTGAGGATTGATAGC 537
Query 357 CTCGCTATCTTATCTCCTGGAAGACCCGATATTGTTCTGTTAGTTCCGGAGAATGGAAAT 416
||||| ||| ||||||||||||||||||| |||||||| || ||||| ||||||||||||
Sbjct 538 CTCGCCATCATATCTCCTGGAAGACCCGACATTGTTCTCTTGGTTCCTGAGAATGGAAAT 597
Query 417 CCAAAGGGCATGTGGTTTACTTTGAAAGAAGGGAGCAAGTACAACTTGAAATTCACCTTT 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 598 CCAAAGGGCATGTGGTTTACTTTGAAAGAAGGGAGCAAGTACAACTTGAAATTCACTTTT 657
Query 477 CAAGTTAACAACAACATTGTCTCTGGTCTTAGGTACACCAATACTGTCTGGAAGACCGGT 536
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 658 CATGTTAACAACAACATTGTCTCTGGTCTTAGGTACACCAATACAGTTTGGAAGACCGGT 717
Query 537 GTTAAAGTGGACAGAGCAAAGGAAATGCTTGGAACCTTTAGTCCTCAATTGGAGCCATAC 596
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 718 GTCAAAGTGGACAGAGCTAAGGAAATGCTTGGAACCTTTAGTCCTCAGTTGGAGCCATAC 777
Query 597 AACCACGTGATGCCAGAAGAGACCACTCCTTCTGGCATGTTTGCTCGAGGATCATATTCT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AACCACGTGATGCCAGAAGAGACCACTCCTTCTGGCATGTTTGCTCGAGGATCATATTCT 837
Query 657 GCAAGAACTAAGTTTCTTGATGATGATAATAAGTGCTACTTGGAGATCAACTACAGCTTT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GCAAGAACTAAGTTTCTTGATGATGATAATAAGTGCTACTTGGAGATCAACTACAGCTTT 897
Query 717 GACATCCGTAAAGAATGGCCTGCGGTTTGAAACTCG-AGAATGCGAG 762
|||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 898 GACATCCGTAAAGAATGGCCTGCGCTTTGAAACTCGGAGAATGCGAG 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37223502927
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5