BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928473
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07890.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 2006 0.0
> AT3G07890.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr3:2516304-2519375 REVERSE LENGTH=1835
Length=1835
Score = 2006 bits (1086), Expect = 0.0
Identities = 1181/1228 (96%), Gaps = 1/1228 (0%)
Strand=Plus/Plus
Query 15 CGGAGGATGTTTGGGATCCAAAGCAGACGTGATTTGACGATGGAGCTACAATCTCAGATT 74
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 292 CGGAGGATGTTTGGGATCCAAAGCAGACGTGATTTAACGATGGAGCTACAATCTCAGATT 351
Query 75 CCGATTCTCCGTCCAAGCATCCACGCCAGACGAGCCAACATCGTCGTGAAATTCCAGGAC 134
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 352 CCGATTCTCCGTCCAAGCATCCACGCAAGACGAGCCAACATCGTCGTTAAATTCCAGGAC 411
Query 135 TTGTACGGTTTCACGGTGGAAGGAAATGTCGACGACGTCAATGTGTTGAACGAAGTTAGA 194
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 412 TTGTACGGGTTCACGGTGGAAGGAAATGTCGACGACGTTAATGTGTTGAACGAGGTTAGA 471
Query 195 GAGAAAGTCAGGAACCAAGGACGGGTTTGGTGGGCTCTTGAAGCTAGCAAAGGAGCTAAT 254
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 472 GAGAAAGTCAGGAATCAAGGACGAGTTTGGTGGGCTCTTGAAGCTAGCAAAGGAGCTAAT 531
Query 255 TGGTATCTTCAACCGGAGATTCTCTTGATCGGTGACGGAATCGCTTTGAAAACGTCTCTC 314
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 532 TGGTATCTTCAGCCGGAGATTCTCTTGATCGGTGACGGTATCGCTTTGAAAACTTCTCTC 591
Query 315 AAGATCTCGACTTTGACGAATGCGATTACCTTGAAGAGATTGATTCGGAAAGGGATCCCA 374
||| |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 592 AAGCTCTCCACTTTGACTAATGCGATTACGTTGAAGAGATTGATTCGGAAAGGGATCCCT 651
Query 375 CCTGTGCTTAGGCCTAAGGTTTGGTTTTCTCTTTCTGGTGCTGCCAAGAAGAAGTCCACC 434
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 652 CCTGTGCTTAGACCTAAGGTTTGGTTTTCTCTTTCTGGTGCTGCTAAGAAGAAATCCACC 711
Query 435 GTCCCGGATAGTTATTACAGTGATTTGACCAAAGCCGTCGATGGGAAGGTCACGCCGGCT 494
||||| || |||||||| ||||||||||||||||||||||| |||| |||||||||||||
Sbjct 712 GTCCCAGAGAGTTATTATAGTGATTTGACCAAAGCCGTCGAAGGGATGGTCACGCCGGCT 771
Query 495 ACGAGGCAGATTGATCATGATCTGCCACGCACTTTCCCTGGCCATCCATGGTTGGACACT 554
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 772 ACGAGGCAGATTGATCATGATCTGCCACGTACTTTCCCAGGCCATCCATGGTTGGACACT 831
Query 555 CCAGAGGGTCATGCTGCTCTACGGCGTGTGCTTGTTGGGTATTCCTTTCGCGATTCAGAT 614
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 832 CCAGAAGGTCATGCTGCTCTACGACGTGTGCTTGTTGGGTATTCCTTTCGTGATTCAGAT 891
Query 615 GTTGGCTATTGTCAGGGTCTAAACTACGTTGCAGCGTTACTATTACTTGTCATGAAGACA 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GTTGGCTATTGTCAGGGTCTAAACTACGTTGCAGCGTTACTATTACTTGTCATGAAGACA 951
Query 675 GAAGAAGACGCATTCTGGATGCTAGCAGTCCTTTTGGAAAACGTATTAGTTCGTGACTGT 734
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 952 GAAGAAGACGCATTCTGGATGCTAGCGGTCCTTTTGGAAAACGTATTAGTCCGTGATTGT 1011
Query 735 TACACAACCAACTTGTCTGGATGCCATGTTGAGCAGCGGGTCTTCAAAGATTTGCTTGCC 794
|||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1012 TACACAACCAACTTATCTGGATGTCATGTTGAGCAGCGGGTTTTCAAAGATTTGCTTGCC 1071
Query 795 CAAAAATGTCCTCGAATAGCTACTCATCTTGAAGATATGGGCTTTGATGTTTCCCTTGTA 854
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 CAAAAATGTTCTCGAATAGCTACTCATCTTGAAGATATGGGCTTTGATGTTTCCCTTGTA 1131
Query 855 GCCACTGAATGGTTTCTATGCCTCTTCTCTAAAAGCCTTCCTTCAGAGACAACTCTAAGG 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GCCACTGAATGGTTTCTATGCCTCTTCTCTAAAAGCCTTCCTTCAGAGACAACTCTAAGG 1191
Query 915 GTGTGGGATGTACTTTTCTATGAAGGAGCAAAGGTTCTATTCCATGCAGCGTTAGCAATA 974
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1192 GTGTGGGATGTACTTTTCTATGAAGGAGCGAAGGTTCTATTCCATGCAGCTTTAGCAATA 1251
Query 975 TTCAAGATGAAAGAGAACGAGCTGCTTATGACCCACCAGGTCGGGGATGTTATCAACATA 1034
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1252 TTCAAGATGAAAGAGAACGAGCTGCTTATGACCCACCAGGTCGGCGATGTTATCAACATA 1311
Query 1035 TTACAGAAAACTTCACACCAGCTTTTTGACCCGGATGAATTATTAACGGTGGCATTTGAG 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 TTACAGAAAACTTCACACCAGCTTTTTGACCCGGATGAATTATTAACGGTGGCATTTGAG 1371
Query 1095 AAAATCGGATCGATGACTACCAACACCATATCAAAGCAGAGGAAGAAGCAGGAACCAGCC 1154
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1372 AAAATCGGATCAATGACTACCAACACGATATCAAAGCAGAGGAAGAAGCAGGAACCAGCA 1431
Query 1155 GTGATGGCAGAACTTGACCAGAGACTTCGGAGACTCAACTCTCTGAAAGAAAGTGGTAAG 1214
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 1432 GTGATGGCAGAACTTGACCAGAGACTTCGGAGACTTAACTCTCTTAAAGAAAGTGGGAAG 1491
Query 1215 AGCACATAAACAAAAA-GAACTGTTGGG 1241
|||||||||| ||||| |||||||||||
Sbjct 1492 AGCACATAAATAAAAAAGAACTGTTGGG 1519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61144263810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5