BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928476

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G07910.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   128    3e-29


> AT3G07910.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED 
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 
Reactive oxygen species modulator 1 (InterPro:IPR018450); Has 
192 Blast hits to 192 proteins in 80 species: Archae - 0; 
Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39; Viruses 
- 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:2523157-2524165 
REVERSE LENGTH=552
Length=552

 Score =  128 bits (69),  Expect = 3e-29
 Identities = 88/97 (91%), Gaps = 1/97 (1%)
 Strand=Plus/Minus

Query  1   TTCGTTTCTTGTGTCGGAGAAT-GGTTTTTACGGTTGCCCTCGCCGCTTTTAAGGGTTTT  59
           |||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||
Sbjct  97  TTCGTTTCTTGTGTCGGAGAATAGTTTTTTACGGTTGCCCTCGCCGCTTTTAAGGTTTTT  38

Query  60  AACCTCGAAGTTTTTGCTTGCACGATGGATTGGTTTT  96
           ||| | ||||||||||||| | | |||||||| ||||
Sbjct  37  AACTTTGAAGTTTTTGCTTACGCAATGGATTGATTTT  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13672827728


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5