BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928478
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07930.3 | Symbols: | DNA glycosylase superfamily protein |... 1687 0.0
> AT3G07930.3 | Symbols: | DNA glycosylase superfamily protein
| chr3:2526630-2528633 FORWARD LENGTH=1645
Length=1645
Score = 1687 bits (913), Expect = 0.0
Identities = 1216/1353 (90%), Gaps = 57/1353 (4%)
Strand=Plus/Plus
Query 2 GGACGATGGTAGTTCAGTGATGATGACTCGTCGGAGACCCGACTCCGATTTTATCGAGGT 61
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 GGACGATGATAGTTCAGTGATGATGACTCGTCGGAGACCCGACTCCGATTTTATCGAGGT 206
Query 62 AAGTGATGAGAATCGCTCGTTGGGTTTATTTAAGGAGGATGAAGATGAAAAAATTCGAGA 121
||||||||||||||||||||| | |||||||||||||||| |||||||||| ||| ||
Sbjct 207 AAGTGATGAGAATCGCTCGTTTGCTTTATTTAAGGAGGAT---GATGAAAAAAATCGTGA 263
Query 122 TTTGGGTTTAGTTGATGAGTCTGAAACTAGACATGCTTCCACTAATTTGCTTCTTCAATG 181
||||||||||| | ||| || | | | | |||||| |||||| ||||||||||
Sbjct 264 TTTGGGTTTAG-T--TGA---TG--A-T-G----G-TTCCACAAATTTGGTTCTTCAATG 308
Query 182 TCATGATGGTAGTTGTTGCCTCCACAAGGATAAGAGCAATAGCTTTGTTTCATGTCGAAG 241
||||||| | | | |||| ||| | | || ||| | ||| | | | | ||
Sbjct 309 TCATGAT-G-A-TGGTTG-TTCC-CTA-GAGAAG-G--ATA-------AT-A-G-C-AA- 347
Query 242 AAACTTGGATGATTTGTTCTCTGGGTTCGTTTATAAGGGTGTGAGGAGGAGGAAAAGGGA 301
| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 348 TAGCTTGGATGATTTGTTCTCTGGGTTTGTTTATAAAGGTGTGAGGAGGAGGAAAAGGGA 407
Query 302 TGACTTTGGAAGTAAAACAACAAGTAGTCTT-TTGTCTCCTCAAATTGC---TGATGATG 357
|||||||||||||| |||||| |||| |||| || |||||||||||||| ||||||||
Sbjct 408 TGACTTTGGAAGTATAACAACGAGTAATCTTGTT-TCTCCTCAAATTGCTGATGATGATG 466
Query 358 ATGATAGTGTTGCTGAATCACATATTGAAAGGCAAGACTGCAGTGTATTTCATGTTGGAG 417
||||||||||| |||| |||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 467 ATGATAGTGTTTCTGATTCACATATTGAAAGGCAAGAATGCAGTGAATTTCATGTTGAAG 526
Query 418 TAAGAAGAGTTTCTCCATACTTCCAGGGATCAACTGTTTCACAACAGTCTAAAGAAGAGT 477
|||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||
Sbjct 527 TAAGAAGAGTTTCTCCATACTTTCAGGGATCTACTGTTTCACAACAGTCCAAAGAAGGGT 586
Query 478 GTGATTCTGATAGTGTTTGTTCTCAAAGTGGAAGAAATTGCAGCAAAGTTCAAGCTAAAG 537
|||||||||||||||||||||| |||| |||| | ||||||||||||||||||||||
Sbjct 587 GTGATTCTGATAGTGTTTGTTC-CAAA---GAAG-GA-TGCAGCAAAGTTCAAGCTAAAG 640
Query 538 TCCCAATAGTTTCTCCATACTTCCAGTCATCAACTATTTCACAATGTGATTCTGACATTG 597
||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 641 TCCCACGAGTTTCTCCATACTTCCAGGCATCAACTATTTCACAGTGTGATTCTGACATTG 700
Query 598 TTTCTTCTTCTCAAAGTGGAAAG-AATTATAGGAGAGGAAGCAGCAAACGTCAAGCTAAA 656
||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||| ||||
Sbjct 701 TTTCTTCTTCTCAAAGTGG-AAGAAATTATCGGAAAGGAAGCAGCAAACGTCAAGTTAAA 759
Query 657 GTCCGAAGAGTTTCGCCTTATTTCCAGGAATCAACTGTTTCAGAACAGCCAAGCCAGGCT 716
||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
Sbjct 760 GTCAGAAGAGTTTCGCCATATTTCCAGGAATCAACTGTTTCAGAACAGCCAAACCAAG-- 817
Query 717 CCTCCTAGAGATTTGCGTCAGTATTTTAAGGTCGTGAAAGTTTCAAGATATTTCCATGCG 776
|||||| || ||||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 818 -CTCCTAAAGGTTTGCGTAACTATTTTAAGGTTGTGAAAGTTTCAAGATATTTCCATGCT 876
Query 777 GATGGAATTCAAGTCAATGAATCACAAAAGGAGAAATCAACAAGGGTGAGAAAAACTCCT 836
|||||||| ||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 877 GATGGAATCCAAGTCAATGAATCACAAAAGGAGAAATCAAGAAATGTGAGGAAAACTCCT 936
Query 837 GTTGTGAGCCCT-TCACTCTCGCTTTCTCAGAGGACCGATGAGGCATACCAGCGGAAAAC 895
||||||||||| | ||||||||||||||| | ||||||||| | ||||| ||| |||||
Sbjct 937 ATTGTGAGCCCTGT-ACTCTCGCTTTCTCAAAAGACCGATGATGTATACCTGCGAAAAAC 995
Query 896 GCCGGATAAAACGTGGGTGCCTCCACGATCTCCATGTAATCTGCTTCAAGAAGATCATTG 955
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 GCCGGATAACACATGGGTGCCTCCACGATCTCCATGTAATCTGCTTCAAGAAGATCATTG 1055
Query 956 GCATGATCCATGGCGGGTGCTGGTCATATGTATGCTTCTCAACAAAACATCTGGTGCACA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 GCATGATCCATGGCGGGTGCTGGTCATATGTATGCTTCTCAACAAAACATCTGGTGCACA 1115
Query 1016 GACGCGGGGAGTGATAGCAGATTTGTTTGCATTGTGTCCTGATGCAAAGACTGCAACAGA 1075
|||||||||||||||| |||| ||||||| ||||||| ||||||||||||||||||||||
Sbjct 1116 GACGCGGGGAGTGATATCAGACTTGTTTGGATTGTGTACTGATGCAAAGACTGCAACAGA 1175
Query 1076 AGTTGAAGAAAAGGAGATAGAGAGTCTAATAAAACCTCTTGGACTACAAAAGAAGAGAGC 1135
|||| ||||| |||||||||||| ||||||||||||||||||| |||||||||||||| |
Sbjct 1176 AGTTAAAGAAGAGGAGATAGAGAATCTAATAAAACCTCTTGGATTACAAAAGAAGAGAAC 1235
Query 1136 CAAAATGATTCAACGGTTTTCTCTCGAGTATCTTCAAGAGAGCTGGACTCATGTCACTCA 1195
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1236 CAAAATGATTCAACGGTTGTCTCTAGAGTATCTTCAAGAGAGCTGGACTCATGTCACTCA 1295
Query 1196 ACTTCATGGCGTTGGAAAGTATGCAGCGGATGCGTATGCGATATTCTGTAACGGGAATTG 1255
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 ACTGCATGGCGTTGGAAAGTATGCAGCGGATGCGTATGCGATATTCTGTAACGGGAATTG 1355
Query 1256 GGATCGTGTGAAGCCTGATGATCATATGCTAAACTACTACTGGGAATTTCTCAGGATTCG 1315
|||||| ||||||||| ||||||||||||||||||| |||||||| | |||||||||||
Sbjct 1356 GGATCGCGTGAAGCCTAATGATCATATGCTAAACTATTACTGGGACTACCTCAGGATTCG 1415
Query 1316 GTATAAATTATGAGTGGGAAGGTACAAGTATAT 1348
||||||||||||| || ||||||||||||||||
Sbjct 1416 GTATAAATTATGAATGAGAAGGTACAAGTATAT 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66365120490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5