BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928480

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23890.1 | Symbols: TOPII, ATTOPII | topoisomerase II | chr3...   102    2e-21


> AT3G23890.1 | Symbols: TOPII, ATTOPII | topoisomerase II | chr3:8624750-8631327 
FORWARD LENGTH=4824
Length=4824

 Score =  102 bits (55),  Expect = 2e-21
 Identities = 63/67 (94%), Gaps = 0/67 (0%)
 Strand=Plus/Plus

Query  119   TATGGTGCCTATGGATCCTTGGTATAGAGGTTTTAGAGGTACTATTGAGAAAACTGCGTC  178
             ||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||
Sbjct  2800  TATGGTGCCTATGGATCCTTGGTATAGAGGTTTTAAAGGAACAATTGAGAAAACTGCGTC  2859

Query  179   CAATGAA  185
             ||| |||
Sbjct  2860  CAAAGAA  2866



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14979789202


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5