BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928481

Length=578
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23890.1 | Symbols: TOPII, ATTOPII | topoisomerase II | chr3...   436    8e-122


> AT3G23890.1 | Symbols: TOPII, ATTOPII | topoisomerase II | chr3:8624750-8631327 
FORWARD LENGTH=4824
Length=4824

 Score =  436 bits (236),  Expect = 8e-122
 Identities = 316/355 (89%), Gaps = 4/355 (1%)
 Strand=Plus/Plus

Query  8     TGAGTAAAGAGAACATGCTGGCGGCTCGGCAAGAGGGCTTTCTGAAGAAATTCAATCTCA  67
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  3066  TGAGTGAAGAGAACATGCTGGCGGCTCGGCAAGAGGGCTTTCTGAAGAAATTCAAACTCA  3125

Query  68    CCACGACAAGT-GCTACAAGCAATATGCATCTCTTTGATAAAGAAGGTGTGATAAAGAAA  126
             ||||||||| | |||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct  3126  CCACGACAA-TCGCTACAAGTAATATGCATCTCTTTGATAAAAAAGGTGTGATAAAGAAA  3184

Query  127   TATGCGACTCCAGAACAAATCCTTGAAGAGTTCTTTGACCTCAGGCTTGAATACTATGAG  186
             |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  3185  TATGTGACCCCAGAACAAATCCTTGAAGAGTTCTTTGACCTCAGGTTTGAATACTATGAG  3244

Query  187   AAGAGAAAGGAAATTATGCTGAAGAATCTGGAACTTGAGCTGCTGAAACTAGAAAGCAAA  246
             |||||||||||||   || |||||||| ||||| |||||||| |||||||||||| ||||
Sbjct  3245  AAGAGAAAGGAAACCGTGGTGAAGAATATGGAAATTGAGCTGTTGAAACTAGAAAACAAA  3304

Query  247   GTGAAGTTTATTCGTGGATTTCTCAGTGGTGAAATCAGAAT-ATTTAATAGAAAGAAAGC  305
             | || |||||||| || | |||||||||| ||||||| | | |   || || ||||||||
Sbjct  3305  GCGAGGTTTATTCTTGCAGTTCTCAGTGGAGAAATCATAGTGAAC-AAGAGGAAGAAAGC  3363

Query  306   TGATATTGCTCAGGATTTGAGACAGAGAGGGTTCACACCAGTTCCGAAGAAGGCC  360
              ||||||| | |||| || ||||||| ||||||||||||| |||||| |||||||
Sbjct  3364  CGATATTGTTGAGGACTTAAGACAGAAAGGGTTCACACCATTTCCGAGGAAGGCC  3418



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27779483291


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5