BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928482
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07950.1 | Symbols: | rhomboid protein-related | chr3:25318... 1618 0.0
> AT3G07950.1 | Symbols: | rhomboid protein-related | chr3:2531852-2534504
FORWARD LENGTH=1272
Length=1272
Score = 1618 bits (876), Expect = 0.0
Identities = 930/957 (97%), Gaps = 0/957 (0%)
Strand=Plus/Plus
Query 1 CTCTTGTTCAAGTCCGGCGACATGAGTTCTCCGGGAACGAGTATGTTCACCAATTTCACT 60
|||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 CTCTTGCTCAAGTCTGGAGACATGAGTTCTCCGGGAACGAGTATGTTCACCAATTTCACT 169
Query 61 AAGCTCTGCAAAGGACTTGCTCTGGTGCTTGTGGTGGGACACCTCGTGGTTCAGTTCATT 120
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 170 AAGCTCTGCAAAGGACTTGCCCTGGTACTTGTGGTGGGACACCTCGTGGTTCAGTTCATT 229
Query 121 CCCGCTACCGTCCCATACCTTGCTCTGATTCCGGCGAGGACTATTCCTTTTGCCTGGAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 CCCGCTACCGTCCCATACCTTGCTCTGATTCCGGCGAGGACTATTCCTTTTGCCTGGAAT 289
Query 181 CTGATAACAAGCGGCTATTTTGAACTCTCAGTTTATGGGGTTGTCTTCAGCACCGTTTCT 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 290 CTGATAACAAGCGGCTATTTTGAACTCTCAGTATATGGGGTTGTCTTCAGCACCGTTTCT 349
Query 241 CTCCTCTTTATGGGGAAGTTTCTGGAACCTGTCTGGGGTTCCAAGGAGTTCCTTAAGTTC 300
||||| |||||||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 350 CTCCTTTTTATGGGAAAGTTCCTGGAACCTGTCTGGGGTTCCACGGAGTTCCTTAAGTTC 409
Query 301 ATCTTTGTGGTGAACTTCCTTACGTATCTCTGTGTCTTCGTTACAGCCATTGCCTTATAC 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 410 ATCTTTGTGGTGAACTTCCTTACGTATCTCTGTGTTTTCGTTACAGCCATTGCCTTATAC 469
Query 361 TATATAACTAGGCTAGAAATTTACCTATATATGCCCTTTGCTGGTTTTCATGGTGTCTTG 420
|| ||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 470 TACATAACGAGGCTGGAAGTTTACCTATATATGCCCTTTGCTGGTTTTCATGGTGTCTTG 529
Query 421 GCAGGCCTTCTTGTCGGGATAAAGCAGATAATACCTGACCAGGAGATATTGCTGTTAAAG 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GCAGGCCTTCTTGTAGGGATAAAGCAGATAATACCTGACCAGGAGATATTGCTGTTAAAG 589
Query 481 ATAAAAGCAAAGTGGTTGCCCTCAATTATGATAATTTTGTCAATAGCCTCAAGCTTCTTC 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 590 ATAAAAGCAAAGTGGTTGCCCTCAATTATGCTAATTTTGTCAATAGCCTCAAGCTTCTTC 649
Query 541 ACACTAGATTCAGCAGCATATCTTCCCACTTTGATATTTGGCACATATATGGGCTGGTTA 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 650 ACACTAGATTCAGCAGCATATCTTCCCACTTTGATATTTGGTACATATATGGGCTGGTTA 709
Query 601 TACCTCAGGTACCTACAGAGGAGACCAGAAACAAAGCTCAGAGGTGATCCAAGTGATGAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TACCTCAGGTACCTACAGAGGAGACCAGAAACAAAGCTCAGAGGTGATCCAAGTGATGAC 769
Query 661 TTTGCCTTCTCTACTTTCTTTCCTGAATTTCTCAGGCCCGTAATTGAACCTATTGCCTTA 720
||||||||||||||||||||||||||| |||||||||| |||||||| || |||||||||
Sbjct 770 TTTGCCTTCTCTACTTTCTTTCCTGAACTTCTCAGGCCAGTAATTGACCCCATTGCCTTA 829
Query 721 ATCTTTCACCGGATGCTTTGTGGACGATCAAATGCCACCAGTGAAGACCATGGTTATTCT 780
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 830 ATCTTTCACCGGATGCTTTGTGGAAGATCAAATGCCACCAGTGAAGACCATGATTATTCT 889
Query 781 ACCAGTGGTGCACCATTGCCAGGTTCTGATTCTGCTGAAGCATCCAGGAGGAGAGAAAGA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 ACCAGTGGTGCACCATTGCCAGGTTCTGATTCTGCTGAAGCATCCAGGAGGAGAGAAAGA 949
Query 841 GGGGCAAGAGCTCTAGAGGAGAGACTAGGAACGGAAAGATTGGTTCCTGCAAGGAACAAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 GGGGCAAGAGCTCTAGAGGAGAGACTAGGAACGGAAAGATTGGTTCCTGCAAGGAACAAA 1009
Query 901 GATGAATTGCAGAGTGATGCTTTGGATAGCGTATAAGTGGAGATTGCAATAAGCATT 957
||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||
Sbjct 1010 GATGAATTGCAGAGTGATGGTTTAGATAACGTATAAGTGGAGATTGCAATAAGCATT 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46818225004
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5