BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928493

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25840.1 | Symbols:  | Protein kinase superfamily protein | ...   124    4e-28
  AT3G08490.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...  91.6    4e-18


> AT3G25840.1 | Symbols:  | Protein kinase superfamily protein 
| chr3:9451861-9457554 REVERSE LENGTH=3414
Length=3414

 Score =  124 bits (67),  Expect = 4e-28
 Identities = 96/109 (88%), Gaps = 5/109 (5%)
 Strand=Plus/Plus

Query  168   CTGGCTCCACAAACAATGATATGTT-CTGCCTTCATATGGAACTGAAAGGTCCCTTCTCC  226
             ||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct  2576  CTGGCGCCACAAACAATGATATGTTAC-GCCTTCATATGGAACTGAAAGGTCCCTTC-CC  2633

Query  227   -AAGAAGATGCTTTGCAAGGGAGTAGTTATCGATCAGGACTT-GAGCAT  273
              || ||||||||| ||||||||| | |||| |||||| |||| || |||
Sbjct  2634  TAAAAAGATGCTTCGCAAGGGAGCATTTATTGATCAGCACTTTGATCAT  2682


> AT3G08490.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Late embryogenesis abundant protein, group 2 (TAIR:AT3G24600.1); 
Has 161 Blast hits to 158 proteins in 15 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants 
- 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
| chr3:2573944-2575215 REVERSE LENGTH=1067
Length=1067

 Score = 91.6 bits (49),  Expect = 4e-18
 Identities = 49/49 (100%), Gaps = 0/49 (0%)
 Strand=Plus/Minus

Query  294  TATGGCATCTCTTTGGATATAATCTTTGATCAAGATACCAATCTACATT  342
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  935  TATGGCATCTCTTTGGATATAATCTTTGATCAAGATACCAATCTACATT  887



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15985144182


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5