BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928508

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G37920.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   279    5e-75


> AT4G37920.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast thylakoid membrane, chloroplast, 
chloroplast envelope; BEST Arabidopsis thaliana protein match 
is: unknown protein (TAIR:AT1G36320.1); Has 123 Blast hits 
to 120 proteins in 40 species: Archae - 2; Bacteria - 11; 
Metazoa - 8; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes 
- 17 (source: NCBI BLink). | chr4:17828433-17830465 
REVERSE LENGTH=1537
Length=1537

 Score =  279 bits (151),  Expect = 5e-75
 Identities = 178/190 (94%), Gaps = 6/190 (3%)
 Strand=Plus/Plus

Query  1    CCCTTTTCTCTGCTTTCATCAATGGAGGAAGAAAGATACGCAAAAGCTCAACTATCACCT  60
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  CCC-TTTCTCTGCTTTCATCAATGGAGGAAGAAAGATACGCAAAAGCTCAACTATCACCT  296

Query  61   TTGCTACCGACACTGTCACTTACAGTGGCACTACCAG-----AAGTAAAAAGCTTTGTTG  115
            |||||||||||||||||||||||| ||||||||| ||     |||||||||||| |||||
Sbjct  297  TTGCTACCGACACTGTCACTTACAATGGCACTACAAGTGCGGAAGTAAAAAGCTCTGTTG  356

Query  116  AGGATCTTATGGAAGTTGAGGTTGCTGAAGGTTACACTATGGCTCAGTTCTGTGACAAGA  175
            ||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  357  AGGATCCAATGGAAGTTGAGGTTGCTGAAGGTTACACTATGGCTCAGTTTTGTGACAAGA  416

Query  176  TTATTGATCT  185
            ||||||||||
Sbjct  417  TTATTGATCT  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10204353047


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5