BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928513
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08630.1 | Symbols: | Protein of unknown function (DUF3411)... 1563 0.0
AT3G08640.1 | Symbols: | Protein of unknown function (DUF3411)... 1057 0.0
> AT3G08630.1 | Symbols: | Protein of unknown function (DUF3411)
| chr3:2620832-2622220 FORWARD LENGTH=1389
Length=1389
Score = 1563 bits (846), Expect = 0.0
Identities = 998/1070 (93%), Gaps = 16/1070 (1%)
Strand=Plus/Plus
Query 1 TCACAGATCATAGGGTACGAAGATGGCGGCTATGGTGGCGAAGCTTCATTTATCAG-CGA 59
||||||||||||| ||||||||||||||||||||| ||||||||||||| |||| | |||
Sbjct 90 TCACAGATCATAGTGTACGAAGATGGCGGCTATGGCGGCGAAGCTTCATATATC-GACGA 148
Query 60 AATCAGATCAGAGCAATGTGCGATTGCCGAGAGTGATCAACCTCTCGCGCGATCCAACCA 119
|||| ||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||
Sbjct 149 AATCGGATCAGAGCAATGTGCGATTGCCTAGACTGATCAACCTGTCGCGTGATCCAACCG 208
Query 120 CTAGAGTCTCGTTTCCACGACA-TGATTCAGTATCTTCACTCAACACCAACTTGTCTTCT 178
||||||||| |||||||||| | || ||||| ||||| ||| |||||||||| ||||||
Sbjct 209 CTAGAGTCTTGTTTCCACGAAACGGA-TCAGTTTCTTCGCTCCACACCAACTTCTCTTCT 267
Query 179 ACACATCTCGGGGTTCCATGCGCCGGAGGAGGTGATGGTGGTGGAAGCATCGGTAATCAC 238
|| || | ||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 268 CCAAATATAATGGTTCCATGCGCC---GGAGGTGGTGGTGGTGGAAGCATCGGTAATCAC 324
Query 239 GGCGGTGGAAGTGGAAGCGGAGGA------GGTGGTTATGGAGGTTCAGAAGAAGAAGGA 292
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 325 GGCGGTGGAAGTGGAAGCGGAGGAGGTGGTGGTGGTTATGGAGGTTCAGAAGAAGAAGAA 384
Query 293 TCGTCTTCATGGGGACCAATAGGAATATTCATACAAGGATGGAGATCACGAGTTGCAGCA 352
|||||| ||||||||||| |||| |||| || ||||||||||||||||||||||||||
Sbjct 385 TCGTCTCCATGGGGACCATTAGGGTTATTTATCCAAGGATGGAGATCACGAGTTGCAGCT 444
Query 353 GATCCTCAGTTCCCTTTCAAGGTACTAATGGAAGA-GCTTGTTGGAGTTAGCGCCAATGT 411
||| |||| |||||||||||||||||||||||| | ||||||||| ||||||||||||||
Sbjct 445 GATTCTCAATTCCCTTTCAAGGTACTAATGGAA-ATGCTTGTTGGTGTTAGCGCCAATGT 503
Query 412 ACTTGGCGACATGGCTTCACGCCCTAATTTCGGATTGAACGAGCTAGATTTCGTCTTCTC 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 ACTTGGCGACATGGCTTCACGCCCTAATTTCGGATTGAACGAGCTAGATTTCGTCTTCTC 563
Query 472 CACACTCGTTGTAGGTTCGATTCTCAATTTCACACTCATGTACCTCTTAGCTCCCTCTGC 531
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 564 CACTCTCGTTGTAGGTTCGATTCTCAATTTCACACTCATGTACCTCTTAGCTCCTTCTGC 623
Query 532 AGTATCTCATGGATCCTCCAATTTATTGCCTGGAATCTTTAGAAGCTGTCCATCGAGCCA 591
| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 624 AATATCTCATGGATCCTCCAATTTGTTGCCTGGAATCTTTAGAAGCTGTCCTTCGAGCCA 683
Query 592 TATGTTTGAACAGGGTAGCTTCACTGTAATGAACCGTTTTGGGACTCTTGTGTACAAAGG 651
||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 684 TATGTTTGAACAGGGTAACTTCACCCTTATGAACCGTTTTGGGACTCTTGTGTACAAAGG 743
Query 652 AATGGTTTTTGCGACCGTGGGATTAGCTGCAGGTCTAGTTGGAACCGCTATCTCTAACGG 711
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 744 AATGGTTTTTGCTACCGTGGGATTAGCTGCAGGTCTTGTTGGAACCGCTATCTCTAACGG 803
Query 712 GTTGATCATGCTGAGGAAGAAGATGGATCCGAGCTTCGAAACGCCGAACAAACCACCACC 771
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 804 GTTGATCATGCTGAGGAAAAAGATTGATCCGAGCTTCGAAACGCCGAACAAACCACCACC 863
Query 772 TACGCTGCTGAATTCTTTAACTTGGGCAACGCATATGGGAGTGAGCGCCAATGTGAGGTA 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 TACGCTGCTGAATTCTTTAACTTGGGCAACGCATATGGGAGTGAGCGCCAATGTGAGGTA 923
Query 832 CCAAACGTTGAATGGGGCTGAGTTCTTGCTGGAAAAGTCGTTGCCGCCATTGGTGTTTAA 891
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 924 CCAAACGTTGAATGGGGCTGAATTCTTGCTGGAAAAGTCATTGCCGCCATTGGTGTTTAA 983
Query 892 GACAAGTGTGATAGCGTTGAGGGTTGTGAACAATGTTTTGGGAGGAATGTCGTTTGTTAT 951
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 AACAAGTGTGATTGCTTTGAGGGTTGTGAACAATGTTTTGGGAGGAATGTCGTTTGTTAC 1043
Query 952 ATTGGCGAGGATGACTGGATCACAGTCTGTggaggaggagaagaagatagagatgtcaga 1011
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1044 ATTGGCGAGGATGACTGGATCACAGTCGGTGGAGGAGGAGAAGAAGATAGAGATGTCAGA 1103
Query 1012 gatatcagagaaggagaaagaggatTGAATATCTTATAGAGttt-ttttt 1060
|||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 1104 GATATCAGAGAAGGAGAAAGAGGATTGAATCTCTTAGAGAGTTTCTTTTT 1153
> AT3G08640.1 | Symbols: | Protein of unknown function (DUF3411)
| chr3:2622880-2624308 FORWARD LENGTH=1429
Length=1429
Score = 1057 bits (572), Expect = 0.0
Identities = 867/1005 (86%), Gaps = 38/1005 (4%)
Strand=Plus/Plus
Query 20 AAGATGGCGGCTATGGTGGCGAAGCTTCATTTATCAGCGAAATCAGATCAGAGCAATGTG 79
|||||||||||||||| |||||||||||| ||||| |||||||| ||||| |||| ||||
Sbjct 110 AAGATGGCGGCTATGGCGGCGAAGCTTCAGTTATCGGCGAAATCTGATCAAAGCAGTGTG 169
Query 80 CGATTGCCGAGAGTGATCAACCTCTCGCGCGATCCAACCACTAGAGTCTCGTTTCCACGA 139
||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 170 CGATTACCGAGAGTGATCAACCTCTCCCGCGATCCAACGACTAGAGTCTCGTTTCCGCGA 229
Query 140 CAT-GATTCAGTATCTTCACTCAACACCAACTTGTCTTCTACACATCTCGGGGTTCCATG 198
|| || ||||| | ||| ||| ||||||| || |||||| ||||||||| | || ||
Sbjct 230 AATGGA-TCAGTTTGTTCCCTCCACACCAATTTCTCTTCTCCACATCTCGCGAAACCTTG 288
Query 199 CGCCGGAGGAGGTGATGGTGGTGGAAGCATCGGTAATCACGGCGGTGGAAGTGGAAGC-- 256
|||| ||||||| |||||||||||||| ||||||| ||||||| ||||| ||||||
Sbjct 289 CGCC---GGAGGTGGTGGTGGTGGAAGCACCGGTAATAACGGCGGCGGAAGCGGAAGCGG 345
Query 257 -GGAGGA---GGTGGTTATGGAGGTTCA------GAAG-AA--GAAGGATCGTCTTCATG 303
|||||| ||||||| |||||||||| |||| || |||| ||| ||| ||||
Sbjct 346 AGGAGGAGGTGGTGGTTTTGGAGGTTCAGGGGGTGAAGCAAGTGAAGAATCATCTCCATG 405
Query 304 GGGACCAATAGGAATATTCATACAAGGATGGAGATCACGAGTTGCAGCAGATCCTCAGTT 363
|||||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||
Sbjct 406 GGGACCAATAGGGTTATTCATCCAAGGATGGAGATCAAGAGTTGCAGCTGATCCTCAGTT 465
Query 364 CCCTTTCAAGGTACTAATGGAAGAGCTTGTTGGAGTTAGCGCCAATGTACTTGGCGACAT 423
|||||| |||||||||||||||||| | || ||| ||||||| ||| || || |||||
Sbjct 466 CCCTTTTAAGGTACTAATGGAAGAGATCGTAGGACTTAGCGCTTGTGTTCTCGGTGACAT 525
Query 424 GGCTTCACGCCCTAATTTCGGATTGAACGAGCTAGATTTCGTCTTCTCCACACTCGTTGT 483
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 526 GGCTTCACGACCTAATTTCGGATTAAACGAGCTAGATTTCGTCTTCTCCACGCTCGTTGT 585
Query 484 AGGTTCGATTCTCAATTTCACACTCATGTACCTCTTAGCTCCCT-CTGCAGTATCTCATG 542
||||||||||||||||||| |||||||||| | |||||| ||| |||||| | ||| ||
Sbjct 586 AGGTTCGATTCTCAATTTCGTACTCATGTACATGTTAGCT-CCTACTGCAGCAACTCTTG 644
Query 543 GATCCTC-CA-ATTTATTGCCTGGAATCTTTAGAAGCTGTCCATCGAGCCATATGTTTGA 600
| ||||| || | | ||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 645 GCTCCTCTCAGA-CT-TTGCCTGGAATCTTTAGAAACTGTCCATCAAGCCATATGTTTGA 702
Query 601 ACAGGGTAGCTTCACTGTAATGAACCGTTTTGGGACTCTTGTGTACAAAGGAATGGTTTT 660
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 703 ACAGGGTAGCTTCACCGTTATGAACCGTTTCGGGACTCTTGTGTACAAAGGAATGGTTTT 762
Query 661 TGCGACCGTGGGATTAGCTGCAGGTCTAGTTGGAACCGCTATCTCTAACGGGTTGATCAT 720
||| | || ||||||||||||||||| || || || || || ||||| |||||||| ||
Sbjct 763 TGCTAGTGTAGGATTAGCTGCAGGTCTTGTAGGTACTGCCATTTCTAATGGGTTGATTAT 822
Query 721 GCTGAGGAAGAAGATGGATCCGAGCTTCGAAACGCCGAACAAACCACCACCTAC-GCTGC 779
|||||||||||||||||| ||||||||||||||||| |||||||| ||||| || | |||
Sbjct 823 GCTGAGGAAGAAGATGGACCCGAGCTTCGAAACGCCAAACAAACCGCCACCGACTG-TGC 881
Query 780 TGAATTCTTTAACTTGGGCAACGCATATGGGAGTGAGCGCCAATGTGAGGTACCAAACGT 839
| |||||||||||||||||||| |||||||||||||| || |||| |||||||||||||
Sbjct 882 TTAATTCTTTAACTTGGGCAACTCATATGGGAGTGAGTGCGAATGCAAGGTACCAAACGT 941
Query 840 TGAATGGGGCTGAGTTCTTGCTGGAAAAG-TCGTTGCCGCCATTGGTGTTTAAGACAAGT 898
|||||||| |||||||||||||| |||| | |||||| |||||||||||||||||||||
Sbjct 942 TGAATGGGATTGAGTTCTTGCTGGCAAAGGT-GTTGCCCCCATTGGTGTTTAAGACAAGT 1000
Query 899 GTGATAGCGTTGAGGGTTGTG-AA-CAATGTTT-TGGGAGGAATGTCGTTTGTTATATTG 955
||||||| |||||| | ||| || ||||||| ||| |||||||||||||||| | |||
Sbjct 1001 GTGATAGTTTTGAGG-T-GTGCAAACAATGTTGCTGG-AGGAATGTCGTTTGTTTTGTTG 1057
Query 956 GCGAGGATGACTGGATCACAGTCTGTggaggaggaga-agaagat 999
|| |||||||| ||||||||||| ||||||||| ||| ||| |||
Sbjct 1058 GCAAGGATGACGGGATCACAGTCGGTGGAGGAGAAGACAGA-GAT 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51957564075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5