BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928521
Length=477
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08710.1 | Symbols: ATH9, TRX H9, TH9 | thioredoxin H-type 9... 765 0.0
> AT3G08710.1 | Symbols: ATH9, TRX H9, TH9 | thioredoxin H-type
9 | chr3:2645195-2646497 FORWARD LENGTH=894
Length=894
Score = 765 bits (414), Expect = 0.0
Identities = 458/479 (96%), Gaps = 4/479 (1%)
Strand=Plus/Plus
Query 1 TTCGAATTTCCAGAACATTCAAATGGGGAGCTGCGTCTCTAAGGGCAAAGGAGACGATGA 60
||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 257 TTCGAATTTCCAGGACATTCAAATGGGTAGCTGCGTCTCTAAGGGTAAAGGAGACGATGA 316
Query 61 TTCCATCCATAACGTCGAGTTTTCCGGTGGCAATGTTCATCTGATTACAACAAAAGAGAG 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TTCCGTCCATAACGTCGAGTTTTCCGGTGGCAATGTTCATCTGATTACAACAAAAGAGAG 376
Query 121 TTGGGATGAGAAATTAGCTGAAGCTGGTCGTGATGGCAAAATCGTGGTTGCAAACTTCAG 180
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 377 TTGGGATGACAAATTAGCTGAAGCTGATCGTGATGGCAAAATCGTGGTTGCAAACTTCAG 436
Query 181 CGCGACATGGTGCGGTCCGTGTAAGATTGTGGCACCATATTTCATCGAGCTCTCAGAGAA 240
||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 437 TGCGACATGGTGTGGTCCGTGTAAAATTGTGGCACCATTTTTCATCGAGCTCTCAGAGAA 496
Query 241 ACACCCTTCTCTTATGTTCCTTCTTGTAGATGTTGATGAACTCAGCGATTTTAGCTCATC 300
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 ACATTCTTCTCTTATGTTCCTTCTTGTAGATGTTGATGAACTCAGCGATTTTAGCTCATC 556
Query 301 ATGGGACATAAAGGCAACACCAACCTTCTTCTTCCTAAAGAATGGACAACAAATAGGCAA 360
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 ATGGGACATTAAGGCGACACCAACCTTCTTCTTCCTAAAGAATGGACAACAAATAGGCAA 616
Query 361 GCTTGTTGGAGCAAACAAACCGGAGCTACAGAAGAAGGTTACTTCTATCATTGATTCTGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 GCTTGTTGGAGCAAACAAACCGGAGCTACAGAAGAAGGTTACTTCTATCATTGATTCTGT 676
Query 421 GCCTGAAAGTCCTCAACGGTCTT--CT-T-GACTTTCGCAGCCTTGTCTTCTGAGGTCT 475
||||||||||||||||||| ||| || | |||| |||||||||||| |||||||||||
Sbjct 677 GCCTGAAAGTCCTCAACGGCCTTGACTCTTGACTCTCGCAGCCTTGTGTTCTGAGGTCT 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22705834444
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5