BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928524
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08740.1 | Symbols: | elongation factor P (EF-P) family pro... 1212 0.0
> AT3G08740.1 | Symbols: | elongation factor P (EF-P) family protein
| chr3:2654626-2656239 REVERSE LENGTH=958
Length=958
Score = 1212 bits (656), Expect = 0.0
Identities = 720/751 (96%), Gaps = 3/751 (0%)
Strand=Plus/Plus
Query 1 CTCGCCGGCGGAAGAACAAAATGGCCGGAAGAGCGATTTTCTCTGTA-C--CATCATGTC 57
||||||||||||||||||||||||| ||||||||||||||||||||| | |||| |
Sbjct 66 CTCGCCGGCGGAAGAACAAAATGGCGGGAAGAGCGATTTTCTCTGTATCTTGTTCATCTA 125
Query 58 CTCCTTCCTTGTGCATCCCTTATTCAACTGCTTCTTTTTCATCGATGAATCGATTGGCGC 117
||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 126 CTCCTTCCTTGTGTATCCCTTATTCAACTGCTTCGTTTTCATCGATGAATCGACTGGCGC 185
Query 118 TCCCCGCCGTGCGGATTTCTCCCCGAACCAACAGATTTCCCAGGATTCACTGCTCTTTGT 177
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 186 TCCCCGCCGTCCGGATTTCTCCCCGAACCAACAGATTTCCCAGGATTCACTGCTCTATGT 245
Query 178 CTGCTAACGACATCAAAGCCGGAACCAATATCGAAGTCGATGGTGCTCCTTGGCGTGTAC 237
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 246 CTGCTAACGACATCAAAGCGGGAACCAATATCGAAGTCGATGGTGCTCCTTGGCGTGTTC 305
Query 238 TTGAGTTTCTTCATGTCAAACCAGGAAAAGGTGCGGCATTTGTGAGGACCAAGATCAGGA 297
|||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 306 TTGAGTTTCTTCATGTTAAACCAGGAAAAGGTGCGGCATTTGTGAGAACTAAGATCAGGA 365
Query 298 ACTATGTAAATGGTAGCACCGTGGAGAGAACATTTCGTGCTGGAATTTCTGTTGAGGAAG 357
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 366 ACTATGTGAATGGTAGCACAGTCGAGAGAACATTTCGTGCTGGAATTTCTGTTGAGGAAG 425
Query 358 CTAATATATACAAAGAAACCAAACAATTCACATACAAAGATGGGTCTCAGTTTGTTTTCA 417
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 CTAATATATATAAAGAAACCAAACAATTCACATACAAAGATGGGTCTCAGTTTGTTTTCA 485
Query 418 TGGATTTGACCACATACGAAGAAACACGTCTTAACGAATCTGATATGGGTGAGAAGACGA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TGGATTTGACCACATACGAAGAAACACGTCTTAACGAATCTGATATGGGTGAGAAGACGA 545
Query 478 AATGGTTGAAAGAAGGAATGGAATGCATTTTGCTGTATTGGAAAGACAAGGTTATCGATT 537
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 546 AATGGTTGAAAGAAGGAATGGATTGCATTTTGCTCTATTGGAAAGACAAGGTTATCGATT 605
Query 538 TCGATCTACCGATTACAGTTAAGCTGAAAGTGGTTGACGTTGATCCTGGCCTTCGCGGTG 597
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 606 TCGATCTACCGATTACAGTTAAGCTAAAAGTGGTTGACGTTGATCCTGGCCTTCGCGGTG 665
Query 598 ATACTGTGCAAGGTGGATCAAAACCGGCGACAATGGAAACGGGTGCAATAGTTGCTGTAC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 ATACTGTGCAAGGTGGATCAAAACCGGCGACAATGGAAACGGGTGCAATAGTTGCTGTAC 725
Query 658 CACTCTTTATTAACGTTGGTGAAGAGATATTCGTGGATACTAGAACTGGTGCATACATGA 717
|||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||
Sbjct 726 CACTCTTTATTAACGTCGGTGAAGAGATATTTGTGGACACAAGAACTGGTGCATACATGA 785
Query 718 ATCGGGCGTGATCCGGGTCTACTACACCTAG 748
| || ||||||||||||||||||||||||||
Sbjct 786 ACCGAGCGTGATCCGGGTCTACTACACCTAG 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36319288281
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5