BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928536
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08860.1 | Symbols: PYD4 | PYRIMIDINE 4 | chr3:2696559-26991... 2242 0.0
> AT3G08860.1 | Symbols: PYD4 | PYRIMIDINE 4 | chr3:2696559-2699158
REVERSE LENGTH=1712
Length=1712
Score = 2242 bits (1214), Expect = 0.0
Identities = 1402/1492 (94%), Gaps = 16/1492 (1%)
Strand=Plus/Plus
Query 1 GTTTTAACGGCGGTGAAAAGATGCGGAGGTTAACGGCTATTAATTCACTACTGAAACGGA 60
||||||||| ||||||||| ||||||| ||||||||| |||||||||||||||||||||
Sbjct 52 GTTTTAACGTCGGTGAAAAAATGCGGAAGTTAACGGCGGTTAATTCACTACTGAAACGGA 111
Query 61 ACAATCATCTTCTTCAGCGTCATGGCTTCTCTCAGACAGTAGCTCAGAGAACAACCTCCG 120
||||| ||||||||| ||| ||||||| ||| || |||| ||||||||||||| ||||||
Sbjct 112 ACAATTATCTTCTTCCGCGCCATGGCTCCTCACAAACAGCAGCTCAGAGAACATCCTCCG 171
Query 121 T----TTG--CGAGACCGAAACAAAAATTCCGAAAATGCCCCCGTTCAGTTATTCTCCGC 174
| | |||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 172 TCCGCGAGACCGAGACCGAAACAAAACTTCCGAAAATGCCCCCGTTCAATTATTCTCCGC 231
Query 175 CGCCTTACGACGGTCCATCCACGGCAGAGATCATCGCAAAACGGCGAGAGTTCCTCAGCC 234
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 232 CGCCTTACGACGGTCCATCTACGGCAGAGATCATCGCAAAGCGGCGAGAGTTCCTCAGCC 291
Query 235 CAGCTCTGTTTCACTTCTACAACACAGCCTTAAACATTGTGGAGGGAAAGAGGCAGTATG 294
| ||||| |||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 292 CCGCTCTTTTTCACTTCTACAACACACCCTTAAACATTGTGGAGGCAAAGATGCAGTATG 351
Query 295 TGTTTGACGAGAATGGACGGCGATATTTAGATGCCTTCGGAGGAATAGCTACGGTTTCCT 354
|||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |
Sbjct 352 TGTTCGACGAGAATGGACGTCGATATTTAGATGCCTTTGGAGGAATAGCGACGGTTTCGT 411
Query 355 GCGGCCATAGCCACCCGGAAGTAGTTAACTCCGTCATCAAACAGTT-AAAGCTTATTCAA 413
|||||||| |||||||||||||||||||||||||| |||||||||| ||| |||||| ||
Sbjct 412 GCGGCCATTGCCACCCGGAAGTAGTTAACTCCGTCGTCAAACAGTTGAAA-CTTATT-AA 469
Query 414 -CACTCCACCA-CGCTTTACCTTAACCACACCATCTCCGATTTCGCTGAAGCCCTAGTCT 471
|||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 470 CCACTCCACCATC-CTTTACCTTAACCACACCATCTCCGATTTCGCTGAAGCCCTTGTCT 528
Query 472 CCAATCTTCCCGGAGATCTCAAGGTGGTGTTTTTCACGAATTCGGGTACGGAGGCGAATG 531
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 CCACTCTTCCGGGAGATCTCAAGGTGGTGTTTTTCACGAATTCGGGTACGGAGGCGAATG 588
Query 532 AGCTTGCGATGATGATGGCTAGACTGTATACAGGATGTAACGACATCGTTTCGCTTAGGA 591
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 AACTTGCGATGATGATGGCTAGACTGTATACAGGATGTAACGACATCGTTTCGCTTAGGA 648
Query 592 ACTCTTATCATGGAAACGCAGCTGCTACTATGGGAGCCACTGCTCAGTCCAACTGGAAAT 651
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 649 ACTCTTATCATGGAAACGCAGCTGCTACTATGGGTGCCACTGCTCAGTCCAACTGGAAAT 708
Query 652 TTAACGTCGTTCAGAGTGGAGTTCACCACGCCATAAATCCAGATCCATACAGAGGAATAT 711
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 709 TCAACGTCGTTCAGAGTGGAGTTCATCACGCCATAAATCCAGATCCTTACAGAGGAATAT 768
Query 712 TTGGATCCGACGGTGGAAAGTACGCAAGTGATGTACATGACCTTATCCAATTCGGAACTT 771
||||||||||||||| ||||||||| ||||||||||| || ||||||||||||||||| |
Sbjct 769 TTGGATCCGACGGTGAAAAGTACGCGAGTGATGTACACGATCTTATCCAATTCGGAACGT 828
Query 772 CCGGTCAAGTCGCCGGTTTCATTGGCGAATCAATCCAGGGAGTTGGAGGAATAGTAGAGC 831
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 829 CCGGTCAAGTCGCCGGTTTCATTGGCGAATCAATCCAGGGTGTTGGAGGAATCGTAGAGC 888
Query 832 TTGCTCCGGGATACTTACCGGCGG-TGTATAACATCGTGAGGAAAGCCGGAGGAGTTTGC 890
||||||| |||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 889 TTGCTCCCGGATACTTACCGGCGGCT-TACGACATCGTGAGGAAAGCCGGAGGAGTTTGC 947
Query 891 ATCGCCGATGAAGTCCAATCCGGTTTCGCTCGTACCGGTACCCATTTCTGGGGGTTTCAA 950
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 948 ATCGCCGATGAAGTCCAATCCGGTTTTGCTCGTACCGGAACCCATTTCTGGGGGTTTCAA 1007
Query 951 TCCCATGGTGTTATCCCTGACATCGTCACCATGGCCAAGGGGATCGGGAACGGTATACCA 1010
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1008 TCCCATGGTGTTATCCCTGACATCGTCACCATGGCCAAGGGGATCGGTAACGGTATACCA 1067
Query 1011 CTTGGAGCGGTTGTGACGACACCGGAGATCGCCGGCGTTTTAAGCCGCCGGAGTTACTTT 1070
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1068 CTTGGAGCGGTTGTGACGACACCGGAGATTGCCGGCGTTTTAAGCCGTCGGAGTTACTTT 1127
Query 1071 AATACTTTCGGCGGAAACCCAATGTGCACGGCCGCAGGACATGCAGTACTAAGAGTCATT 1130
||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 1128 AATACTTTCGGCGGAAATCCAATGTGCACGGCCGCAGGACACGCAGTACTTAGAGTCCTT 1187
Query 1131 AACGAAGAGAAGCTCCAAGAGAATGCTAACCTCGTTGGCTCACATCTCAAACGTAGACTT 1190
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1188 CACGAAGAGAAGCTCCAAGAGAATGCTAACCTCGTTGGCTCACATCTTAAACGTAGACTT 1247
Query 1191 ACGCTACTCAAAAACAAACATGAACTCATTGGAGACGTGAGAGGAAGAGGATTGATGCTA 1250
|||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||
Sbjct 1248 ACGCTACTCAAAAACAAATACGAACTCATTGGAGACGTGAGAGGGAGAGGATTGATGCTA 1307
Query 1251 GGAGTTGAGCTTGTCACAGACGGTGACTTAAAAACTCCTGCTAAAA-CTGAGACCCTTCA 1309
||||||||| |||||| |||| | ||||||||||||||||| |||| | |||||||||||
Sbjct 1308 GGAGTTGAGTTTGTCAAAGACCGCGACTTAAAAACTCCTGC-AAAAGCAGAGACCCTTCA 1366
Query 1310 TTTAATGGATCAAATGAAAGAAATGGGAGTGTTGGTGGGGAAAGGTGGATTCTATGGGAA 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 TTTAATGGATCAAATGAAAGAAATGGGAGTGTTGGTGGGGAAAGGTGGATTCTATGGGAA 1426
Query 1370 CGTCTTCAGAATCACTCCTCCTCTCTGTTTCACCCTCTTCGACGCTGATTTCCTCGTGGA 1429
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1427 TGTCTTCAGAATCACTCCTCCTCTCTGCTTCACCCTCTCCGACGCTGATTTCCTCGTGGA 1486
Query 1430 TGTGATGGATCACGCCATGTCCAAGATGTGATTTACTATATTTACCCGATCT 1481
||||||||||||||||||||||||||||||||||||||| |||| ||| |||
Sbjct 1487 TGTGATGGATCACGCCATGTCCAAGATGTGATTTACTATCTTTATCCGTTCT 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73041792975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5