BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928539
Length=554
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08890.1 | Symbols: | Protein of unknown function, DUF538 |... 911 0.0
> AT3G08890.1 | Symbols: | Protein of unknown function, DUF538
| chr3:2706632-2707993 FORWARD LENGTH=800
Length=800
Score = 911 bits (493), Expect = 0.0
Identities = 530/548 (97%), Gaps = 1/548 (0%)
Strand=Plus/Plus
Query 8 GAT-TGTGAGAGAGAATGGATCAGATCTTGAACAAGGTAGGCTCGTACTGGTTAGGTAAG 66
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 GATCTGTGAGAGAGAATGGATCAGATCTTGAACAAGGTAGGCTCGTACTGGTTAGGTAAG 114
Query 67 AAAGCGAACAAGCAGCTCGATTCCGTCGGTGACGATATCAACTCTTTGTCTACGAGCATC 126
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 115 AAGGCGAACAAGCAGCTCGATTCCGTCGGTGACGATATCAACTCTTTGTCTTCGAGCATC 174
Query 127 GAAGGAGGAACAAAATGGTTGGTGAACAAAATCAAAGGAAAAATGCAGAAGCCATTGCCC 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GAAGGAGGAACAAAATGGTTGGTGAACAAAATCAAAGGAAAAATGCAGAAGCCATTGCCC 234
Query 187 GAGTTACTAAAGGAGTATGGTTTGCCTGTGGGGATCTTTCCACGTGATGCCACCAACTAC 246
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 235 GAGTTACTAAAGGAGTTTGGTTTGCCTGTGGGGATCTTTCCACGTGATGCAACCAACTAC 294
Query 247 GAGTTCAATGAACAGACGAGGAAGTTAACCGTCTTTATTCCATCAATCTGCGAAGTTGGC 306
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 295 GAGTTCAATGAACAGACGAGGAAGTTAACTGTCTTTATTCCATCAATCTGCGAAGTTGGT 354
Query 307 TACAAAGATTCATCAGTCTTGAGATTCACCACAACAGTTACCGGATTTCTAGAGAAAGGA 366
||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 355 TACAAAGATACATCAGTCTTGAGATTCACCACTACAGTTACCGGATTTCTCGAGAAGGGA 414
Query 367 AAGCTAGCCGATGTTGAAGGGATGAAGACAAAAGTAATGATTTGGGTTAAAGTCACAAGT 426
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 415 AAGCTAGCTGATGTTGAAGGGATGAAGACAAAAGTAATGATATGGGTTAAAGTCACAAGT 474
Query 427 ATTTCTGCTGATTCTTCAAAGGTTCATTTCACAGCAGGGATGAAGAAAAGCAGAAGCCGG 486
|| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 475 ATCTCTGCTGATTCTTCAAAGGTACATTTCACGGCAGGGATGAAGAAAAGCAGAAGCCGA 534
Query 487 GATGCTTATGAGGTTTTAAGAGATGGCGTTGAGATTGATAAATTCTAGCCCTGTTTTGCT 546
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 535 GATGCTTATGAGGTTTTAAGAGATGGCGTTGAGATTGATAAATTCTAGCTCTGTTTTGCT 594
Query 547 GGTAATTC 554
||||||||
Sbjct 595 GGTAATTC 602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26573863763
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5