BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928542
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08910.1 | Symbols: | DNAJ heat shock family protein | chr3... 1552 0.0
AT5G01390.1 | Symbols: | DNAJ heat shock family protein | chr5... 320 2e-86
> AT3G08910.1 | Symbols: | DNAJ heat shock family protein | chr3:2710154-2711895
REVERSE LENGTH=1304
Length=1304
Score = 1552 bits (840), Expect = 0.0
Identities = 961/1019 (94%), Gaps = 9/1019 (1%)
Strand=Plus/Plus
Query 1 AAGGAGGAGGAGGTATAGCAATGGGGGTCGATTATTACAAGGTTCTTCAGGTGGATCGGA 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 AAGAAGGAGGAGGTATAGCAATGGGGGTCGATTATTACAAGGTTCTTCAGGTGGATCGGA 124
Query 61 ACGCGAAAGACGACGACTTGAAGAAAGCTTATCGCAAACTCGCCATGAAGTGGCATCCAG 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 ATGCGAAAGACGACGACTTGAAGAAAGCTTATCGCAAACTCGCCATGAAGTGGCATCCAG 184
Query 121 ACAAGAACCCTAATAACAAAAAGGACGCCGAATCCAAATTCAAGCAGATCTCTGAAGCTT 180
||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |||||||
Sbjct 185 ACAAGAACCCTAACAACAAAAAAGACGCCGAAGCCAAATTCAAGCAGATCTCCGAAGCTT 244
Query 181 ACGATGTTTTGAGTGATCCTCAAAAGCGAGCAATCTATGATCAATACGGAGAAGAAGGTC 240
|||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||
Sbjct 245 ACGATGTTTTGAGTGATCCTCAAAAGAGAGCCATCTATGATCAATATGGAGAAGAAGGTC 304
Query 241 TAACAAGCCAGGTTCCGCCTCCTGGTGCCGGCGGGTTTTCGGGTGGTTCAGATGGAGGGG 300
|||||||||||| ||||||||| || || ||| || ||||| ||| ||||||||||
Sbjct 305 TAACAAGCCAGGCTCCGCCTCCCGGAGCAGGC-GG----CGGGT-TTTCGGATGGAGGGG 358
Query 301 CTTCGTTCCGGTTCAACGGCAGAAGCGCAGATGACATCTTCTCCGAGTTCTTTGGCTTCA 360
||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 359 CTTCGTTCCGGTTCAACGGTAGAAGCGCAGATGATATCTTCTCGGAGTTCTTTGGCTTCA 418
Query 361 CAAGACCCTTCGGTGACTCACGTGGTGCAGGTCCCTCTAATGGCTTCCGGTTCGCGGAAG 420
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 419 CAAGACCATTTGGTGACTCACGTGGTGCAGGTCCCTCTAATGGGTTCCGGTTCGCGGAAG 478
Query 421 ACGTTTTTTCCTCGAA---TGTTACAATGAGGAAAGCTGCCCCTATTGAGAGACAACTTC 477
||||||| || || || |||| || ||||||||||||||||||||||||||||||||
Sbjct 479 ACGTTTTCTCGTCAAATGTTGTTCCACCGAGGAAAGCTGCCCCTATTGAGAGACAACTTC 538
Query 478 CTTGTAGTTTGGAGGATCTCTACAAAGGAATCACTAAGAAGATGAAGATCTCTCGGGACG 537
||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 539 CTTGTAGTTTGGAAGATCTCTACAAAGGAGTCAGTAAGAAGATGAAGATCTCTCGGGACG 598
Query 538 TCCTCGATTCAAGCGGGAGACCCACAACAGTTGAGGAGATCTTGACAATAGAAATCAAGC 597
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 TCCTCGATTCAAGCGGGAGACCCACAACAGTTGAGGAGATCTTGACGATAGAAATCAAGC 658
Query 598 CAGGGTGGAAGAAAGGGACGAAGATAACCTTCCCAGAGAAAGGAAACGAGCAGCGAGGAA 657
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 659 CAGGGTGGAAGAAAGGGACGAAGATTACCTTCCCGGAGAAAGGAAACGAGCAGCGAGGAA 718
Query 658 TCATACCATCAGATCTTGTATTCATAGTTGATGAGAAGCCACATGCTGTGTTCAAGCGAG 717
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 719 TCATACCATCAGATCTTGTATTCATAGTTGATGAGAAGCCACATGCGGTGTTCAAGCGAG 778
Query 718 ACGGGAATGACCTTGTGATGACACAGAAGATCCCTCTCGTGGAAGCCCTCACGGGATACA 777
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 779 ACGGGAATGACCTTGTGATGACACAGAAGATCCCTCTTGTGGAAGCCCTCACGGGATACA 838
Query 778 CCGCTCAGGTCACAACTCTGGACGGAAGATCAGTAACGGTTCCAGTCAACATCGTGATTA 837
| ||||||||| | |||||||| ||||||||||||||||||||| | |||| |||||| |
Sbjct 839 CTGCTCAGGTCTCGACTCTGGATGGAAGATCAGTAACGGTTCCAATTAACAACGTGATCA 898
Query 838 GCCCTTCTTATGAAGAGGTGGTGAAAGGCGAAGGCATGCCAATCCCTAAAGACCCATCaa 897
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 899 GCCCTTCTTATGAAGAGGTGGTGAAAGGTGAAGGCATGCCAATCCCTAAAGACCCATCAA 958
Query 898 aaaaaGGGAACTTGAGAATCAAGTTCAATGTTAAGTTCCCATCAAGGCTAACAACAGAGC 957
| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 959 AGAAAGGGAACTTGAGAATCAAGTTCACTGTTAAGTTCCCATCGAGGCTAACAACAGAGC 1018
Query 958 AGAAATCTGGAATCAAACGAATGTTTTCGTCTTCGTAGTCTGTCTCTTTCTCTCTTACT 1016
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1019 AGAAATCTGGAATCAAACGAATGTTTTCGTCTTCCTAGTCTGTCTCTTTCTATCTTACT 1077
> AT5G01390.1 | Symbols: | DNAJ heat shock family protein | chr5:160264-162299
REVERSE LENGTH=1344
Length=1344
Score = 320 bits (173), Expect = 2e-86
Identities = 300/359 (84%), Gaps = 17/359 (5%)
Strand=Plus/Plus
Query 21 ATGGGGGTCGATTAT-TACAAGGTTCTTCAGGTGGATCGGAA-CGCGAAAGACGACGA-C 77
|||||||| |||| | || ||||||||| | || |||| ||| || || |||||||| |
Sbjct 101 ATGGGGGTTGATT-TCTATAAGGTTCTTGAAGTTGATC-GAAGTGCTAATGACGACGAGC 158
Query 78 TTGAAGAAAGCTTATCGCAAACTCGCCATGAAGTGGCATCCAGACAAGAACCCTAATAAC 137
|| ||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||
Sbjct 159 TT-AAGAAAGCTTATCGCAAACTCGCCATGAAATGGCATCCTGATAAGAACCCTAACAAC 217
Query 138 AAAAAGGACGCCGAATCCAAATTCAAGCAGATCTCTGAAGCTTACGATGTTTTGAGTGAT 197
||||| || |||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 AAAAAAGAAGCCGAAGCTAAATTCAAGCAGATCTCTGAAGCTTACGATGTTTTGAGTGAT 277
Query 198 CCTCA-AAAGCGAGCAATCTATGATCAATACGGAGAAGAAGGTCTAACAAGCCAGGTTCC 256
||||| ||| ||||||||||| || |||||||||||||||||| ||| | ||| | ||
Sbjct 278 CCTCAGAAA-CGAGCAATCTACGAGCAATACGGAGAAGAAGGTTTAA-A--CCAAGCCCC 333
Query 257 GCCTCCTGGTGCCGGCGG-GTTT-TCG-GGTGGTTCAGATGGAGGGGCTTCGTTCCGGTT 313
||||| || ||||| || | | || || || ||||| | || ||||| ||||||||
Sbjct 334 ACCTCCCGGCGCCGGTGGTGGCTATCCTGGAGGATCAGACGCCGGAGCTTCTTTCCGGTT 393
Query 314 CAA-CGGCAGAAGCGCAGATGACATCTTCTCCGAGTTCTTTGGCTTCACAAGACCCTTC 371
||| | ||||||||| ||||| |||||||||||||||||||| ||||| || || |||
Sbjct 394 CAATCC-CAGAAGCGCTGATGATATCTTCTCCGAGTTCTTTGGTTTCACGAGGCC-TTC 450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49782039677
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5